Transcription Factor
| Accessions: | T060953_1.02 (CISBP 1.02) |
| Names: | NCU03975, T060953_1.02; |
| Organisms: | Neurospora crassa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 517 |
| Pfam Domains: | 215-237 Zinc finger, C2H2 type 215-237 C2H2-type zinc finger 229-254 Zinc-finger double domain 243-267 C2H2-type zinc finger 243-267 Zinc finger, C2H2 type 259-283 Zinc-finger double domain 273-295 C2H2-type zinc finger 273-295 Zinc finger, C2H2 type 287-314 Zinc-finger double domain 301-325 C2H2-type zinc finger 301-325 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MSEPESATAAMGIGSVLNTKGAQASAALAQAAQAAQIAQPTQQLEQSAPVPQLATPEQQP 60 61 SQPLTQQQPMERASSPHASVKFEPSMSYPSPTGMGTAMPVSTVPSAHMAPGGQMATNPQM 120 121 VPNNQMAPNAQMGPNLQMAPNSQMAPNAQMAPSGQMASSAQMAPNAQMAPAPMGIPAMPT 180 181 VPGVPSNNGMVPSLHPSYKPQVEGGAPPGPPPKAYACSTCAKAFARRSDLARHERIHSGI 240 241 RPHVCDYPGCGKQFIQRSALTVHQRVHTGEKPHQCERCGKPFSDSSSLARHRRIHSGKRP 300 301 YKCPYMDCQKTFTRRTTLTRHQNHHTGTVEESAKATAEALARGTLARTKERSESEQISNQ 360 361 ATPMTTPSPAQRPLSLSPSAGLANMEMQYLQTNTLPAHLRGDVHVSNAPTTSPGYSNGLT 420 421 RPTSHPTGYVPPATMEPTVETQQGSGSAAGSPQIGSAGWASPGGVGSPAQSPSGNGYVYP 480 481 DPEPFPGASAGQMFYDSAVGTGRRLGSGEPQNPSYHT |
| Interface Residues: | 191, 192, 194, 195, 198, 215, 225, 226, 227, 228, 229, 231, 232, 234, 235, 236, 238, 255, 256, 257, 258, 259, 262, 265, 283, 284, 285, 286, 287, 289, 290, 294, 313, 314, 315, 316, 317, 319, 320 |
| 3D-footprint Homologues: | 5v3j_F, 2kmk_A, 7n5w_A, 8ssu_A, 8gn3_A, 2gli_A, 8ssq_A, 7w1m_H, 8h9h_G, 2lt7_A, 1tf6_A, 7ysf_A, 2jpa_A, 1ubd_C, 7y3l_A, 1tf3_A, 8cuc_F, 7txc_E, 6u9q_A, 7y3m_I, 6e94_A, 2drp_D |
| Binding Motifs: | M0473_1.02 ryGCacggac |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.