Transcription Factor
| Accessions: | T135079_1.02 (CISBP 1.02) |
| Names: | Bm_svp_alpha, T135079_1.02; |
| Organisms: | Bombyx mori |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Nuclear receptor |
| Length: | 421 |
| Pfam Domains: | 79-147 Zinc finger, C4 type (two domains) 203-393 Ligand-binding domain of nuclear hormone receptor |
| Sequence: (in bold interface residues) | 1 RRASSRPVTATGIITHGALVYGGVGGPGLCPPRGLDHPPLELGFRGSWREDEHLPSTPAS 60 61 QAASTQSGSSATDKGQNVECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNR 120 121 SCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGRVPPSQPPGLGLPGQFTLGNGDPGAGL 180 181 NNHPYLSSYISLLLRAEPYPASRYSPCVQPTNVMGIDNICELAARLLFSAVEWARNIPFF 240 241 PELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIR 300 301 IFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVTHIESLQEKSQCALEEYCRTQY 360 361 PNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGNTFSWPYMAT 420 421 M |
| Interface Residues: | 88, 89, 91, 92, 98, 99, 101, 102, 105, 106, 130, 152, 154, 156 |
| 3D-footprint Homologues: | 6fbq_A, 7wnh_D, 6l6q_B, 3g9m_B, 1a6y_A, 1lo1_A, 4oln_B, 4iqr_B, 2han_A, 1hcq_E, 8cef_H, 5krb_G, 2han_B, 1kb2_B, 2a66_A, 8hbm_B, 2nll_B, 1lat_A, 7xv6_B, 2ff0_A, 1dsz_A, 4umm_E, 3cbb_A, 7xvn_C, 5emc_A, 7prw_B, 5cbx_B, 3g6t_A, 1r4i_A, 5cbz_E, 4tnt_B, 5e69_A, 4hn5_B, 8rm6_A |
| Binding Motifs: | M1495_1.02 rtGACCyy |
| Related annotations: | PaperBLAST |
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