Transcription Factor

						

			
Accessions: T037065_1.02 (CISBP 1.02)

			
Names: B0310.2, T037065_1.02;
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 413
Pfam Domains:   306-327 C2H2-type zinc finger
  323-346 Zinc-finger double domain
  336-358 C2H2-type zinc finger
  336-358 Zinc finger, C2H2 type
Sequence: 
(in bold interface residues)		   1 MEKSQPLSEFFSKQLVDPVSDALRSHTCSEQEMTLLESAIVHARDSLLEEIQRSKISEDV   60
  61 TQTVDCLLSRVDELLEETRNFAPISPLSSEAPDILPAMILFNSLCSSKSLDLEPIEIKVE  120
 121 AMENPVVSPPIFSSDDSVKGMPSRKRAKRSLEDTVQMLSKENSVSPPPPSLPFVLPQIPV  180
 181 PIPFSNAALMQRWLGHPLTNPAYLNAMFQHQPAPKPSEEQFAALMKITMHAANFMKTVPQ  240
 241 LPVSNHFTESDAEDIKIDVESDEGEIEVSPSPSTGDITENESSSSSTGPMISPNCGDGDC  300
 301 ALEKPFICMHNNCGKRFANKFLLKKHMFIHTGLRPHTCPHCHKKFNRKDNLLRHKKTHSP  360
 361 TSAHLGPILPKNPFHGIPQLPVLHNIALTQGFSHFHALKMSLETGATAVRSLS
Interface Residues: 160, 318, 319, 320, 321, 322, 324, 325, 326, 346, 347, 348, 349, 350, 351, 352, 353, 354, 357, 371, 373
3D-footprint Homologues: 8gj0_B, 7w1m_H, 8cuc_F, 3uk3_C, 7y3l_A, 2kmk_A, 1tf3_A, 6blw_A, 5ei9_F, 2jpa_A, 1g2f_F, 6u9q_A, 1ubd_C, 8h9h_G, 5k5i_A, 1llm_D, 7n5w_A, 6jnm_A, 5kkq_D, 2lt7_A, 7txc_E, 6a57_A, 4x9j_A, 2gli_A, 8ssu_A, 1f2i_J, 7ysf_A, 6ml4_A, 5kl3_A, 2wbs_A, 5v3j_F, 4m9v_C, 6e94_A, 8ssq_A, 7y3m_I, 8gn3_A, 5yj3_D, 2drp_D, 1tf6_A, 8gh6_A
Binding Motifs: M0379_1.02 ktGAGGkwma
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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