Transcription Factor

						

			
Accessions: Q4H3C6 (JASPAR 2024)

			
Names: Q4H3C6_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H3C6
Length: 335
Pfam Domains:   110-166 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MSIIDQTELDFHNRGYVTNGIIKDRDVIDQGLPFFPTHHESAAALNLADMHGRGKEQAIS   60
  61 SSKSSPEDDKTDEEYQAMGSRRSSNGPPVVYPWMKRIHVSQVINGLESGKRPRTAYTRHQ  120
 121 VLELEKEFHYNRYLTRRRRIEIAHGLCLSERQVKIWFQNRRMKWKKDHKLPNTKVRNPPT  180
 181 SSLPILPTPSPPMTSLNHMLPNLSLPGSQSSPHNYDKSPPMTPTGGEYPIPNHALMHQPM  240
 241 TSRELNDAIGDSPTTEASYKSHDRRELDAMTSFQECNPPRNDHHPLMFDATGIPHSTFYG  300
 301 GVMSIPNSWNGDHSRAYISANQNSPYPSYPLSTFQ
Interface Residues: 96, 110, 111, 112, 113, 114, 151, 152, 154, 155, 158, 159, 161, 162, 163, 166
3D-footprint Homologues: 4cyc_A, 1fjl_B, 8pmf_A, 1ig7_A, 5zfz_A, 3cmy_A, 1puf_A, 8ejp_B, 6a8r_A, 3lnq_A, 1zq3_P, 2lkx_A, 6m3d_C, 1jgg_B, 3d1n_M, 2ld5_A, 1nk2_P, 1puf_B, 8osb_E, 7q3o_C, 5jlw_D, 8eml_B, 1b72_A, 6es3_K, 4xrs_G, 3a01_E, 3rkq_B, 5flv_I, 2hdd_A, 9b8u_A, 5zjt_E, 2r5y_A, 8ik5_C, 7psx_B, 5hod_A, 2hos_A, 2xsd_C, 7xrc_C, 1e3o_C, 1le8_A, 1o4x_A, 8g87_X, 1du0_A, 8bx1_A, 4qtr_D
Binding Motifs: MA1885.1 wwwwwraTmATTAwykwwww
MA1885.2 TmATTA
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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