Transcription Factor

						

			
Accessions: T161784_1.02 (CISBP 1.02)

			
Names: T161784_1.02;, vad-3
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Zinc cluster
Length: 1131
Pfam Domains:   207-242 Fungal Zn(2)-Cys(6) binuclear cluster domain
  363-542 Fungal specific transcription factor domain 
Sequence: 
(in bold interface residues)		   1 MPPADSQALNNNNNSLSSVDLNFAPAGGDTHGHPPHSDPAAFQTHPLDKLDTSNDALGSI   60
  61 DAAHDLVDGHYADFQFHYDDDLDGSPMTGLGSATFDDHAPDVFSTTPHAPSMDSITVQTS  120
 121 TYNNNGANTGNGGQRQQSMDMSESNTPDSNQNAGNSLEETVDEFGLATASSVDGSAPKGK  180
 181 GDKTDNTPAWSELKTKAGKERKRLPLACIACRRKKIRCSGEKPACKHCLRSRIPCVYKVT  240
 241 ARKAAPRTDYMAMLDKRLKRMEERIIKIVPKSEQEGASTVTRAVVKPAIPGTLNNMKQAN  300
 301 KKRGADEAFGSDLENWARGPAKTKIDAPNRTATIHIQETEESKLLLEGGDALPSKEIQEH  360
 361 LAEVYFENIYGQAYHLLHKPSFMRKLKAGALPPVLILSVCAIAARFSHHPKLNSSPNFLR  420
 421 GEEWAAAARDIVTKRYEWPNITILTCLLILGLHEFGTCHGGRSWSLGGQAIRMAFALQLH  480
 481 KDLEHDPVRQAGNTQLSFIDREIRRRTMWACFLMDRFNSSGTDRPTFIREETLRVPLPIK  540
 541 EKNFQYDMPGPTETLSGEVLGPLLEDQDASMARDNLGVAAWMIKAISLWGRIINYLNQGG  600
 601 RELDPHPMWSPESGYAKLIKQTEDILTDLPDSLLYTPDNLHLHETDNMANQFLFLHIAIQ  660
 661 QNILFMNRFAVSSPRGQPDQEIPKAFVTKAGAKAFAAANRVSELLKDAESHFVTAPFTGY  720
 721 CAFLSSTVHIFGIFSGNPTLEATSKRNLATNVKFLSKMKKYWGMFHWMSENLREQYRTCA  780
 781 DAARQGTPANENPTSIFQYGDWFDRYPHGVSQSDFLDPAIYKKKEKGDDAVLEQKPELHT  840
 841 VEEFFTTLSPQAGGGDGGSVNGSTASRQQQQAQQQQQLKRKAMTRKISGLPQQNHPNGPD  900
 901 PIQAEFSPHQQQHPPPTAEQIHAARLQHQRNFSGAGPSPIQTSGPPGSFNSLSVQAQQQA  960
 961 HFSPVSPVGVSHAHLSHHHPGSFFPPDPFSLPAHLGAAHAHGMSHLDRQLVFGAYGGPTS 1020
1021 AGLHHEPGLVGGGGGGSGGGGAGGWGGGHDSENGRDGPDGLHAAFSNEPSSAWFMPFNME 1080
1081 PPEIGGDTLGGLGGALGGGGLDSFAGMFGVGAGGGGGGGGGGGMGGMHHGH
Interface Residues: 201, 203, 206, 207, 214, 215, 216, 242, 243, 244, 245
3D-footprint Homologues: 2hap_D, 6o19_A, 2er8_C, 1pyi_A, 7uik_T, 1d66_B, 3coq_A, 1zme_D
Binding Motifs: M1747_1.02 awcTGCCGrmk
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.