Transcription Factor

						

			
Accessions: T091068_1.02 (CISBP 1.02)

			
Names: hbx4, T091068_1.02;
Organisms: Dictyostelium discoideum
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Homeodomain
Length: 740
Pfam Domains:   612-662 Homeobox domain
  623-662 Homeobox KN domain
Sequence: 
(in bold interface residues)		   1 MNTVEENNTKITDNNNNNNNNNNNNNNNNNNNKNNDGENLSQQLIDSNNKKLRSPIQVYF   60
  61 DSDVSSCSLQSQSSPQQLPTQQPIQQQINNIFNHFLPQNQAPLLQAQNQQPINNINQVSN  120
 121 FQIQPIPLTFQLPNNINTNTNNTNMINNVQQFQNNFLNNNDFSLTDPVPSPFVLFNNNNN  180
 181 NNNNNNNNNNNNINNFHHNNINNNFDNNNSNYNTINTHPNNTNNNSSNINQIQSNIYPQQ  240
 241 NLHNPFLPIHNNNNINNNNINKNNNNYNNNNNNKNNNNNNNNNNNNNNPQLFSMEPPNGF  300
 301 NHSTTDNTSSVSSVPSNKKKSSKTKQKSKPLTIQQQQQHKSNYHQQPNQNSQHLQSKPNS  360
 361 PILISSPLNSQQNSSPPQPSPTQSFLSPPQYSQSPQNNNFNNNNNNISNNNNNNNNNNNN  420
 421 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSTNNNNNNSNTNNNTNTNTNNNNN  480
 481 KNNNNNNNNEIENNNNEELILLWYNSIIKNIIVDENHFKIENQFNKENGYLVFKQLFKNH  540
 541 FGSIGTIGKEMAEYIQLHCEVMNEITELSKFHFQSIDNFYNNYIRIINGYSLIPAKDSGA  600
 601 TIKARPKKGAKLSKESKDILENWIKNHIAHPYPTNDEKEQLQRQTGLTPNQISNWFINTR  660
 661 RRKVPTLCDEAGIITNSNVMPQMTINNNNNNGGNSNFKNNNNNTITTTSTSNNNNNNNNN  720
 721 NHNEMECDDGENEESSEYDD
Interface Residues: 608, 610, 611, 653, 654, 657, 658, 659, 661, 662
3D-footprint Homologues: 1mnm_C, 1le8_B, 1k61_B, 1le8_A, 6fqq_E, 3lnq_A, 5zfz_A, 1puf_B, 1du0_A, 7psx_B, 4xrm_B, 6a8r_A, 2hdd_A, 4xrs_G, 1nk2_P, 6fqp_B, 5hod_A, 1puf_A, 2hos_A
Binding Motifs: M0872_1.02 dttGACrkst
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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