Transcription Factor

						

			
Accessions: T110284_1.02 (CISBP 1.02)

			
Names: GSVIVG00007522001, T110284_1.02;
Organisms: Vitis vinifera
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:MADF
Length: 342
Pfam Domains:    63-129 Myb/SANT-like DNA-binding domain
   66-146 Myb/SANT-like DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MPRPMSFFVEEDEDMLMDADGNNVEHVPQHDPHRHHPQRQHLQQILLTESSGEDIEIKVP   60
  61 RRRAETWVHDETHSLIAFRRELDEFFNTSKSNKHLWEQIAARMSELGYDRTAAMCTDKWR  120
 121 NLLKDYKKAQQRDGGSGKMYYEELEEFYAEKKRNDPYRKITSSRAPFMHISEKDGRKARF  180
 181 NSEKVMDYDQHSLGISEAEVVAANGLPPWNRKETPGSGTENESAYTGRVIWVNYGECTKR  240
 241 IGIDGSSDSIKEAIRSSFGLRTNRAFWLEDENEIVRSLDRDMPLTTYTLCLDAGLTIKIC  300
 301 LYDQPCQLLPVRTEEKTFYCEDDLRDFLHHRGWMGLRRFKLL
Interface Residues: 113, 116, 117, 120, 121, 122
3D-footprint Homologues: 3osg_A, 7c4r_A
Binding Motifs: M1283_1.02 GTTAACyv
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.