Transcription Factor

						

			
Accessions: T098456_1.02 (CISBP 1.02)

			
Names: ceh-22, T098456_1.02;
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Homeodomain
Length: 283
Pfam Domains:   127-183 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MQTYAFSRLEAKWDTLLPTDTNLQCSTWPDSIPLLAGYSATPTFSFDPCTYGSYDPSAYF   60
  61 ASNGIAGSMYTLPDQFPRSENDMLDNSNTSNGNKSDKDGIKLEDEDEILEDEENDEEDDG  120
 121 TGKRKKRKRRVLFTKAQTYELERRFRSQKYLSAPEREALAMQIRLTPTQVKIWFQNHRYK  180
 181 TKKSHTDKPINAALLTTMPNAFSSQSTAASFPTRAMPIPMLVRDSSARSSDISSTSPYTV  240
 241 AFGSANSGYLPTPSAYLPATSGYFSNGPSAASSYMTNTQWWPS
Interface Residues: 127, 128, 129, 130, 132, 168, 169, 171, 172, 175, 176, 178, 179, 180, 183
3D-footprint Homologues: 5zfz_A, 1fjl_B, 3cmy_A, 8ejp_B, 1puf_A, 1ig7_A, 3d1n_M, 6a8r_A, 8pmf_A, 3lnq_A, 1nk2_P, 1zq3_P, 2lkx_A, 2ld5_A, 6es3_K, 8ik5_C, 1mnm_C, 7q3o_C, 5jlw_D, 4xrs_G, 3a01_E, 9b8u_A, 1au7_A, 3rkq_B, 6m3d_C, 5flv_I, 2hdd_A, 1b72_A, 5zjt_E, 4cyc_A, 2r5y_A, 8osb_E, 7psx_B, 2hos_A, 8eml_B, 1puf_B, 1jgg_B, 1e3o_C, 7xrc_C, 1le8_A, 2xsd_C, 8g87_X, 1k61_B, 1o4x_A, 5hod_A, 1du0_A, 4qtr_D
Binding Motifs: M1086_1.02 syACTTrA
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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