Transcription Factor
Accessions: | 1vtl_E (3D-footprint 20231221) |
Names: | AtTBP1, TATA sequence-binding protein 1, TATA-binding factor 1, TATA-box factor 1, TATA-box-binding protein 1, TBP-1, TBP1_ARATH, Transcription initiation factor TFIID TBP-1 subunit |
Organisms: | Arabidopsis thaliana |
Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
Uniprot: | P28147 |
Length: | 186 |
Pfam Domains: | 11-93 Transcription factor TFIID (or TATA-binding protein, TBP) 98-184 Transcription factor TFIID (or TATA-binding protein, TBP) |
Sequence: (in bold interface residues) | 1 DLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTAL 60 61 IFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEG 120 121 LAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVL 180 181 SEFRKI |
Interface Residues: | 15, 17, 45, 46, 60, 62, 68, 70, 104, 105, 107, 136, 137, 151, 153, 159, 161 |
3D-footprint Homologues: | 4wzs_D, 6cnb_R, 1cdw_A, 5iy6_P, 7z7n_D, 1qna_B, 5n9g_G, 1ytb_A, 5oqj_O, 1ais_A |
Binding Motifs: | 1vtl_E TATAAaAg |
Binding Sites: | 1vtl_A 1vtl_B |
Publications: | Kim J.L, Nikolov D.B, Burley S.K. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365:520-7 (1993). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.