Transcription Factor
| Accessions: | T20160 (AthalianaCistrome v4_May2016), Q9T0D3 (JASPAR 2024) |
| Names: | AT4G11660, HSF7, T20160;, AtHsf-11, AtHsfB2b, Heat shock factor protein 7, Heat shock transcription factor 7, Heat stress transcription factor B-2b, HFB2B_ARATH, HSF 7, HSTF 7 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:HSF |
| Length: | 377 |
| Pfam Domains: | 60-152 HSF-type DNA-binding |
| Sequence: (in bold interface residues) | 1 MPGEQTGETPTVAGVGGGGAGCSAGNSGGSSGCGAGGGGGGSGGGGGGGGDSQRSIPTPF 60 61 LTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGF 120 121 RKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQPAMAAAAAAAAAAVAASAVTVAAVPVV 180 181 AHIVSPSNSGEEQVISSNSSPAAAAAAIGGVVGGGSLQRTTSCTTAPELVEENERLRKDN 240 241 ERLRKEMTKLKGLYANIYTLMANFTPGQEDCAHLLPEGKPLDLLPERQEMSEAIMASEIE 300 301 TGIGLKLGEDLTPRLFGVSIGVKRARREEELGAAEEEDDDRREAAAQEGEQSSDVKAEPM 360 361 EENNSGNHNGSWLELGK |
| Interface Residues: | 104, 105, 109, 110, 112, 113, 114, 116, 117, 148, 301, 305 |
| 3D-footprint Homologues: | 5hdn_C, 4uno_A, 3hts_B, 5d5v_B, 5d5w_B, 7dci_A, 1wte_A |
| Binding Motifs: | M0453 aGAAgcTTCTAGAA M0456 / MA1666.1 TTCTAGAAgcTTCt MA1666.2 ctrGAAGsTTCTagaa MA1666.3 rGAAGsTTCTa |
| Binding Sites: | MA1666.2.1 MA1666.2.10 MA1666.2.11 MA1666.2.12 MA1666.2.13 / MA1666.2.14 MA1666.2.15 MA1666.2.16 MA1666.2.17 MA1666.2.18 MA1666.2.19 MA1666.2.2 MA1666.2.20 MA1666.2.3 MA1666.2.4 MA1666.2.5 MA1666.2.6 MA1666.2.7 MA1666.2.8 MA1666.2.9 MA1666.3.1 MA1666.3.10 / MA1666.3.11 / MA1666.3.5 MA1666.3.12 MA1666.3.13 / MA1666.3.14 MA1666.3.15 MA1666.3.16 MA1666.3.17 / MA1666.3.6 MA1666.3.18 MA1666.3.19 MA1666.3.2 MA1666.3.20 MA1666.3.3 MA1666.3.4 MA1666.3.7 MA1666.3.8 MA1666.3.9 |
| Publications: | Wu C. Heat shock transcription factors: structure and regulation. Annu Rev Cell Dev Biol : (1995;11:441-69.). [Pubmed] |
| Related annotations: | PaperBLAST |
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