Transcription Factor
| Accessions: | T069882_1.02 (CISBP 1.02) |
| Names: | NCU02853, T069882_1.02; |
| Organisms: | Neurospora crassa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF,Zinc cluster |
| Length: | 993 |
| Pfam Domains: | 22-45 Zinc-finger double domain 70-100 Fungal Zn(2)-Cys(6) binuclear cluster domain |
| Sequence: (in bold interface residues) | 1 MSEAAPVHRCPVCYKTYKRREHLQRHRASHTSERPHRCILCSASFQRTDVLKRHIQTCDG 60 61 LPHGSSGRRRACDRCVRQKKACNSAQPCQNCSKRAVQCLYSSVGSSSTSQDGEAGSTSAA 120 121 NSVESFSNTPSTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQQQQQQQQT 180 181 QQYQHQQFLHQQPQQLHQQQQQQQQEQQQQQQRQQQRQQQQQQQHQQQHQQQHQQQHQQQ 240 241 HQQQHQQQHQQQQHQPIYLQQQHQYQHQQYHHHQQQQQQQQHPQRPPHHQFQPQQHQQQT 300 301 YQQHPHQQQHNQQQRHHHNVLHAQVTQPLTQIPQIAPVPVPQIPRNHQVPVPQILQQSHQ 360 361 SHQPHSAHQPHHVPFHHPGVAHFDDLDNLLQDAAGQFPMLGHQDTHIPDWIEMELPMGTH 420 421 AMDTPEGNTTSRSTPSSETHRGYSFDFLYDFTSRTGLVDSFECGTHAQRRAVVDAFYASY 480 481 AEQQKHHQQLQQIQQQQQQQQQHLKAQQQIQGQLEFHPMFPQLQHHMGQPPLSPASSSAV 540 541 SISATSNDYSYMPWTPWSSWLSNPIIIKLQEIVVSIMNVVRHKPSNSTLGTLTWTPDKEQ 600 601 ECLQFFSPQRFAKFLELFWSCWHPNVNFMHRPSFDPTSAKPTLLAAMALTGNDTEPGSPA 660 661 DDDANPASALHCKRKLQALQASYIVCLYQNWEGSDASKRRIRRHRFNTVVSVARDIGIPM 720 721 AKHLEYGRLLRHEFDWHEYVVREELIRTFLWVFLLDTAFVIFNNLPHRMVIKEMRMHMAS 780 781 PEAVFQAPTAEKCLEEIYQWMPSSSPICNTLLRDVLENVIGTTLDADTLQRLARLGPLNL 840 841 FVVVSVFHYMIFQHQNLFGVEGQLVPIRNGLDNWITIWELWCDHWSSTPPHCMAASDNLT 900 901 PANMWKRIGFIRCSAEYWLLGSLLTDRIARKTSGGVRENQGKGSSPDSYPDELTGSGKGK 960 961 SNDPILIKYDQTSMRQVNELISDFKKIQLEEIE |
| Interface Residues: | 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 31, 46, 47, 48, 49, 50, 51, 52, 53, 54, 64, 66, 67, 69, 70, 78, 79, 80 |
| 3D-footprint Homologues: | 2kmk_A, 1tf3_A, 3uk3_C, 8cuc_F, 7n5w_A, 1g2f_F, 7y3l_A, 2drp_D, 5ei9_F, 6u9q_A, 5v3j_F, 1f2i_J, 7w1m_H, 5k5i_A, 2lt7_A, 2gli_A, 6ml4_A, 5kkq_D, 1ubd_C, 8gn3_A, 6blw_A, 4x9j_A, 1llm_D, 5kl3_A, 8h9h_G, 4m9v_C, 6e94_A, 7ysf_A, 7y3m_I, 2jpa_A, 8ssq_A, 8ssu_A, 1tf6_A, 5yj3_D, 2wbs_A, 7txc_E, 2er8_C, 6o19_A, 1d66_B, 7uik_T, 6gys_C, 3coq_A |
| Binding Motifs: | M0573_1.02 rawGTsGGrk |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.