Transcription Factor
| Accessions: | ZNF787 (HT-SELEX2 May2017) |
| Names: | ENSG00000142409, ZNF787 |
| Organisms: | Homo sapiens |
| Libraries: | HT-SELEX2 May2017 1 1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] |
| Notes: | TF family: Znf_C2H2 experiment: HT-SELEX Hamming distance: 1 cycle: 4, TF family: Znf_C2H2 experiment: HT-SELEX Hamming distance: 2 cycle: 4, TF family: Znf_C2H2 experiment: Methyl-HT-SELEX Hamming distance: 1 cycle: 4, TF family: Znf_C2H2 experiment: Methyl-HT-SELEX Hamming distance: 2 cycle: 4 |
| Length: | 383 |
| Pfam Domains: | 66-88 C2H2-type zinc finger 66-88 Zinc finger, C2H2 type 66-88 C2H2-type zinc finger 81-104 Zinc-finger double domain 96-114 C2H2-type zinc finger 96-116 Zinc finger, C2H2 type 96-116 C2H2-type zinc finger 108-132 Zinc-finger double domain 122-142 C2H2-type zinc finger 122-144 Zinc finger, C2H2 type 122-144 C2H2-type zinc finger 136-161 Zinc-finger double domain 149-173 C2H2-type zinc finger 150-172 Zinc finger, C2H2 type 150-172 C2H2-type zinc finger 164-188 Zinc-finger double domain 178-200 C2H2-type zinc finger 178-188 C2H2-type zinc finger 178-200 Zinc finger, C2H2 type 280-303 C2H2-type zinc finger 280-303 Zinc finger, C2H2 type 317-337 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MELREEAWSPGPLDSEDQQMASHENPVDILIMDDDDVPSWPPTKLSPPQSAPPAGPPPRP 60 61 RPPAPYICNECGKSFSHWSKLTRHQRTHTGERPNACADCGKTFSQSSHLVQHRRIHTGEK 120 121 PYACLECGKRFSWSSNLMQHQRIHTGEKPYTCPDCGRSFTQSKSLAKHRRSHSGLKPFVC 180 181 PRCGRGFSQPKSLARHLRLHPELSGPGVAAKVLAASVRRAKGPEEAVAADGEIAIPVGDG 240 241 EGIIVVGAPGEGAAAAAAMAGAGAKAAGPRSRRAPAPKPYVCLECGKGFGHGAGLLAHQR 300 301 AQHGDGLGAAGGEEPAHICVECGEGFVQGAALRRHKKIHAVGAPSVCSSCGQSYYRAGGE 360 361 EEDDDDDEAAGGRCPECRGGEGR |
| Interface Residues: | 76, 77, 78, 79, 80, 82, 83, 84, 87, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 117, 132, 133, 134, 135, 136, 139, 142, 146, 147, 160, 161, 162, 163, 164, 165, 166, 167, 188, 189, 190, 191, 192, 194, 195, 199, 228, 229, 230, 231, 232, 235, 238, 255, 258, 270, 275, 289, 291, 292, 293, 294, 297, 301, 327, 328, 329, 330, 331, 355, 356, 358 |
| 3D-footprint Homologues: | 1tf3_A, 7w1m_H, 7n5w_A, 5k5l_F, 1tf6_A, 5yel_A, 5kkq_D, 8gn3_A, 5ei9_F, 4m9v_C, 7ysf_A, 2lt7_A, 6e94_A, 1ubd_C, 6jnm_A, 7txc_E, 2kmk_A, 6ml4_A, 8ssq_A, 6blw_A, 6u9q_A, 2gli_A, 8ssu_A, 5yj3_D, 8h9h_G, 2jpa_A, 3uk3_C, 8cuc_F, 7y3l_A, 5k5i_A, 5v3j_F, 1f2i_J, 4x9j_A, 1g2f_F, 2wbs_A, 1llm_D, 5kl3_A, 6a57_A, 1yuj_A, 2drp_D, 7y3m_I |
| Binding Motifs: | ZNF787_3 rATGCAccwwcssTGCCTCr ZNF787_4 tgCCTCAGTTTmCCy ZNF787_methyl_1 tgCCTCAGTTTmCCy ZNF787_methyl_2 rATGCAckkwsygTGCCTCr |
| Related annotations: | PaperBLAST |
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