Transcription Factor
| Accessions: | T060934_1.02 (CISBP 1.02) |
| Names: | T060934_1.02;, ztf-14 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 500 |
| Pfam Domains: | 263-285 Zinc finger, C2H2 type 278-301 Zinc-finger double domain 291-313 Zinc finger, C2H2 type 291-313 C2H2-type zinc finger 305-332 Zinc-finger double domain 319-344 C2H2-type zinc finger 337-357 Zinc-finger double domain 350-375 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MIPNNTNFNLLHVVPPYPNALDVTHQNSGNSSPSLHNYSSMSPASSVSNTVYNSSEVSPM 60 61 GTGDASWNKAPNYFERPKPDRHIVLNPLGSPDIGAQFQSPASSIMNTINSLVHGSSGGLL 120 121 QVQQSQYFGPAELNPNLKRPHDATTSTEFGALSVVPIPFDCNQTTGGIEQTIREVATNKR 180 181 ERVDEELDVIIPKKQPRLSVNGKRIGRPPGSCKANYIPPTKITEQNDEDVRQCLWDGCTL 240 241 TLDDRATFFVHVDNHIQKNEVNCKWRYCERSFKQTYEFTAHKRTHTKQKLYCCEVCPKRY 300 301 GRLENLKTHRRTHTGEKPYHCNVPNCNKSFTNASDRSKHSKRTHSNEKPYCCDFGSCACA 360 361 YTDPSSLRKHVKSKHPEHHAMKMAMRKTQRKSIKQIASEKVQMSPLPTAAEAPISPQQNL 420 421 PTLPLNMIPPPLQTQLPLRVPPFTGMPFANPALQLFLATQMRMAPPMTPFPLPQLTSLNV 480 481 SPLDLAAILAGAATPKPSTD |
| Interface Residues: | 244, 245, 246, 247, 249, 250, 252, 253, 256, 273, 274, 275, 276, 277, 279, 280, 286, 300, 301, 302, 303, 304, 305, 307, 308, 309, 312, 331, 332, 333, 334, 335, 336, 337, 338, 339, 342, 362, 363, 364, 365, 366, 368, 369, 373 |
| 3D-footprint Homologues: | 8ssq_A, 7w1m_H, 5k5l_F, 8ssu_A, 6e94_A, 2jpa_A, 7n5w_A, 6jnm_A, 3uk3_C, 1tf6_A, 8gn3_A, 5ei9_F, 1g2f_F, 5kl3_A, 5k5i_A, 2kmk_A, 5v3j_F, 4x9j_A, 2gli_A, 1f2i_J, 5kkq_D, 8h9h_G, 7ysf_A, 2lt7_A, 6a57_A, 1ubd_C, 1tf3_A, 8cuc_F, 7y3l_A, 7txc_E, 1llm_D, 6ml4_A, 2drp_D, 6blw_A, 6u9q_A, 5yel_A, 4m9v_C, 7y3m_I, 2wbs_A, 5yj3_D |
| Binding Motifs: | M0461_1.02 tggGtGGtcy |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.