Transcription Factor

						

			
Accessions: T070268_1.02 (CISBP 1.02)

			
Names: T070268_1.02;, ztf-11
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2HC ZF
Length: 539
Pfam Domains:   263-291 Zinc finger, C2HC type
  309-338 Zinc finger, C2HC type
Sequence: 
(in bold interface residues)		   1 MSSISNNPDFSSIDPAVLMSLLMKSSGSLPTPPDTHSDGSESPDSTASDSSDKKRRRKPE   60
  61 SKDIVRVAEEAEAAAATCSSIPSSSDTKENETEEDQNMTCDTTTNNAQKPTEQTATSADV  120
 121 VTSSVPSGLEGVPSFLFSQFMAPSFQKQLEIFTSGNMMSATHSDTSPSDVDSVLDGGVVT  180
 181 AEETSSSKSPMMTSSDTPKTPLTASSPPHSSGSESRVMSPITHTNISDELSISTTPTVAF  240
 241 TPNGSIPSPGTGYSWSIRREGKLACPTPGCDGSGHQTGLYTHHRSLSGCPRRPDKTVIQM  300
 301 LALRQDTVLRCTTAGCSGKGHVNGNRTSHRSLSGCPIAHQEKLARKGIKTTPQRTKTPIK  360
 361 GISISDECPLDLTLSGLPAGLSAQQLLAAAQAGLIPSSQMMDALFQQFSQTQPLATLEEE  420
 421 SKKENEMEVDVETTSDDIPTLIKEEEEVKCESPVPSVIPEIQSTPSRPVAAPVAPGSAEK  480
 481 SSPTSQMLLQMPGFSEALLKMTAPQVPFPQYSPQAALFGNQSALLAQIMLTQLQMQQGF
Interface Residues: 275, 279, 280, 282, 284, 285, 286, 287, 328, 330, 331, 332, 333
3D-footprint Homologues: 2jx1_A, 2mf8_A
Binding Motifs: M0574_1.02 rAAGTTTg
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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