Transcription Factor
| Accessions: | T127937_1.02 (CISBP 1.02), T03002 (AthalianaCistrome v4_May2016), O49255 (JASPAR 2024) |
| Names: | NAP, T127937_1.02;, AT1G69490, T03002;, AtNAC029, AtNAP, NAC transcription factor 29, NAC29_ARATH, Protein NAC-LIKE, ACTIVATED BY AP3/PI |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, AthalianaCistrome v4_May2016 2, JASPAR 2024 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:NAC/NAM, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 268 |
| Pfam Domains: | 9-134 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MEVTSQSTLPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEF 60 61 GENEWYFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKGRPP 120 121 KGIKTDWIMHEYRLHDSRKASTKRNGSMRLDEWVLCRIYKKRGASKLLNEQEGFMDEVLM 180 181 EDETKVVVNEAERRTEEEIMMMTSMKLPRTCSLAHLLEMDYMGPVSHIDNFSQFDHLHQP 240 241 DSESSWFGDLQFNQDEILNHHRQAMFKF |
| Interface Residues: | 75, 77, 80, 81, 82, 83, 91, 93, 95, 115, 119, 120, 121, 124 |
| 3D-footprint Homologues: | 7xp3_B, 6ycq_A, 3swp_A |
| Binding Motifs: | M1401_1.02 hrGTCAasv M0683 ayACGymAyyt M0702 TkaCGTrwwkwwyACGk MA1675.1 wayACGcAACTtw MA1675.2 ACGcAACT |
| Binding Sites: | MA1675.2.16 / MA1675.2.17 MA1675.2.15 MA1675.2.13 MA1675.2.11 / MA1675.2.14 / MA1675.2.20 / MA1675.2.7 MA1675.2.19 / MA1675.2.4 MA1675.2.12 / MA1675.2.2 MA1675.2.1 / MA1675.2.8 / MA1675.2.9 MA1675.1.1 MA1675.1.10 MA1675.1.11 / MA1675.1.6 MA1675.1.12 / MA1675.1.14 MA1675.1.13 / MA1675.1.7 MA1675.1.15 MA1675.1.16 / MA1675.1.8 MA1675.1.17 MA1675.1.18 / MA1675.1.9 MA1675.1.10 / MA1675.1.19 MA1675.1.2 MA1675.1.20 MA1675.1.3 MA1675.1.2 / MA1675.1.4 MA1675.1.5 MA1675.1.3 / MA1675.1.6 MA1675.1.7 MA1675.1.4 / MA1675.1.8 MA1675.1.5 / MA1675.1.9 MA1675.1.11 MA1675.1.12 MA1675.1.13 MA1675.1.14 MA1675.1.15 MA1675.1.16 MA1675.1.17 MA1675.1.18 MA1675.1.19 MA1675.1.20 MA1675.2.10 MA1675.2.18 MA1675.2.3 / MA1675.2.5 MA1675.2.6 |
| Publications: | Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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