Transcription Factor

						

			
Accessions: I3NN78 (JASPAR 2024)

			
Names: I3NN78_SOLLC
Organisms: Solanum lycopersicum
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: I3NN78
Length: 310
Pfam Domains:   134-159 C2H2-type zinc finger
  135-157 C2H2-type zinc finger
  195-218 C2H2-type zinc finger
  195-217 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MSIEALKSPMAAKLSPTVAELPPLEEIDDDSHNLDSWAKGKRSKRPRIENPPTRDQYLAL   60
  61 CLLMLANDDGTGFGKGKGNGTGSIGVEQTEKKPAELKPVFIEEKTEQLLKPVVDKEKTEQ  120
 121 LLKPVVVKEKTEQLFRCSECPKVFTSYQALGGHKASHRKINVPATGDDDSNPSTSTSTSG  180
 181 GGVNISALNPSGRSHVCSICQKAFPTGQALGGHKRRHYEGKLGGNNRYIGGGGEGGGVHS  240
 241 GSVVTTSDGGSGNGGGGASTPIARDFDLNMPASPGWQLDLTIDCGGRTQHPIEQEVESPM  300
 301 PAKKPRLFFE
Interface Residues: 146, 147, 148, 149, 151, 152, 178, 179, 181, 182, 184, 185, 186, 187, 190, 205, 206, 207, 208, 209, 210, 212, 213, 216
3D-footprint Homologues: 2drp_D, 5v3j_F, 7y3m_I, 6e94_A, 5yel_A, 6ml4_A, 8cuc_F, 7y3l_A, 4m9v_C, 8gh6_A
Binding Motifs: MA1405.1 gACTGwCAGT
MA1405.2 ACTGwCAGT
			
Publications: Kubo Ki, Sakamoto A, Kobayashi A, Rybka Z, Kanno Y, Nakagawa H, Takatsuji H. Cys2/His2 zinc-finger protein family of petunia: evolution and general mechanism of target-sequence recognition. Nucleic Acids Res 26:608-15 (1998). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.