Transcription Factor
| Accessions: | T090232_1.02 (CISBP 1.02) |
| Names: | HAT3.1, T090232_1.02; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 723 |
| Pfam Domains: | 267-322 PHD-finger 622-666 Homeobox domain 636-663 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 MYKAVSKRVTRSSGSGLKQTNVDNGGEISPTVDRVSEQGKSSEAGSHMPTDANGNGHLHH 60 61 EIMDHGKGNEEQKPTPQTVKKDSNTNTKFSGSHRELVIGLPCRGQFEIHNRSRASTSSKR 120 121 LGGGGERNVLFASHKRAQRSKEDAGPSSVVANSTPVGRPKKKNKTMNKGQVREDDEYTRI 180 181 KKKLRYFLNRINYEQSLIDAYSLEGWKGSSLEKIRPEKELERATKEILRRKLKIRDLFQH 240 241 LDTLCAEGSLPESLFDTDGEISSEDIFCAKCGSKDLSVDNDIILCDGFCDRGFHQYCLEP 300 301 PLRKEDIPPDDEGWLCPGCDCKDDSLDLLNDSLGTKFSVSDSWEKIFPEAAAALVGGGQN 360 361 LDCDLPSDDSDDEEYDPDCLNDNENDEDGSDDNEESENEDGSSDETEFTSASDEMIESFK 420 421 EGKDIMKDVMALPSDDSEDDDYDPDAPTCDDDKESSNSDCTSDTEDLETSFKGDETNQQA 480 481 EDTPLEDPGRQTSQLQGDAILESDVGLDDGPAGVSRRRNVERLDYKKLYDEEYDNVPTSS 540 541 SDDDDWDKTARMGKEDSESEDEGDTVPLKQSSNAEDHTSKKLIRKSKRADKKDTLEMPQE 600 601 GPGENGGSGEIEKSSSSACKQTDPKTQRLYISFQENQYPDKATKESLAKELQMTVKQVNN 660 661 WFKHRRWSINSKPLVSEENVEKLKTGKEGECETSVAGSSKQTMETESVAEKPTNTGSRKR 720 721 RRK |
| Interface Residues: | 620, 656, 659, 660, 663, 664, 667, 668, 670, 672 |
| 3D-footprint Homologues: | 4cyc_A, 5jlw_D, 1e3o_C, 4j19_B, 1ig7_A, 7q3o_C, 3rkq_B, 2hdd_A, 1k61_B, 6fqp_B, 4xrs_G, 3a01_E, 1puf_B, 5zjt_E, 1le8_B, 6fqq_E, 5flv_I, 3cmy_A, 2d5v_B, 1fjl_B, 6a8r_A, 2lkx_A, 1mnm_C, 1b72_A, 3lnq_A, 2h1k_B, 6es3_K, 4xrm_B, 2r5y_A, 1puf_A, 1du0_A, 5zfz_A, 2hos_A, 6m3d_C |
| Binding Motifs: | M0847_1.02 sTrmACcahy |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.