Transcription Factor
Accessions: | Bcd (SMILE-seq 1.0) |
Names: | Bcd, STAU_DROME |
Organisms: | Drosophila melanogaster |
Libraries: | SMILE-seq 1.0 1 1 Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed] |
Uniprot: | P25159 |
Length: | 488 |
Pfam Domains: | 93-148 Homeobox domain |
Sequence: (in bold interface residues) | 1 MAQPPPDQNFYHHPLPHTHTHPHPHSHPHPHSHPHPHHQHPQLQLPPQFRNPFDLLFDER 60 61 TGAINYNYIRPYLPNQMPKPEELPDSLVMRRPRRTRTTFTSSQIAELEQHFLQGRYLTAP 120 121 RLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEGMPLSPGMKQSDGDPPSLQT 180 181 LSLGGGATPNALTPSPTPSTPTAHMTEHYSESFNAYYNYNGGHNHAQANRHMHMQYPSGG 240 241 GPGPGSTNVNGGQFFQQQQVHNHQQQLHHQGNHVPHQMQQQQQQAQQQQYHHFDFQQKQA 300 301 SACRVLVKDEPEADYNFNSSYYMRSGMSGATASASAVARGAASPGSEVYEPLTPKNDESP 360 361 SLCGIGIGGPCAIAVGETEAADDMDDGTSKKTTLQILEPLKGLDKSCDDGSSDDMSTGIR 420 421 ALAGTGNRGAAFAKFGKPSPPQGPQPPLGMGGVAMGESNQYQCTMDTIMQAYNPHRNAAG 480 481 NSQFAYCF |
Interface Residues: | 65, 93, 94, 95, 96, 134, 135, 137, 138, 141, 142, 145, 146, 147, 149, 151 |
3D-footprint Homologues: | 3l1p_A, 2h1k_B, 1puf_A, 1ig7_A, 3cmy_A, 5zfz_A, 6fqp_B, 3d1n_M, 1fjl_B, 6a8r_A, 3lnq_A, 2lkx_A, 1jgg_B, 1nk2_P, 1zq3_P, 6m3d_C, 6es3_K, 7q3o_C, 2ld5_A, 3a01_E, 7psx_B, 1b72_A, 5jlw_D, 4xrs_G, 2hdd_A, 3rkq_B, 2r5y_A, 1puf_B, 5flv_I, 2hos_A, 5zjt_E, 4cyc_A, 1au7_A, 5hod_A, 1le8_A, 7xrc_C, 1e3o_C, 2xsd_C, 4qtr_D, 1mnm_C, 1du0_A, 1k61_B, 1o4x_A, 8g87_X |
Binding Motifs: | Bcd yTAATCY |
Publications: | Isakova A, Groux R, Imbeault M, Rainer P, Alpern D, Dainese R, Ambrosini G, Trono D, Bucher P, Deplancke B. SMiLE-seq identifies binding motifs of single and dimeric transcription factors. Nat Methods 14:316-322 (2017). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.