Transcription Factor
| Accessions: | T119745_1.02 (CISBP 1.02) |
| Names: | LOC_Os02g09480, T119745_1.02; |
| Organisms: | Oryza sativa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Myb/SANT |
| Length: | 301 |
| Pfam Domains: | 11-56 Myb-like DNA-binding domain 14-72 Myb-like DNA-binding domain 63-106 Myb-like DNA-binding domain 66-114 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MGMEAECDRIKGPWSPEEDEALRRLVERHGARNWTAIGRGIPGRSGKSCRLRWCNQLSPQ 60 61 VERRPFTAEEDAAILRAHARLGNRWAAIARLLPGRTDNAVKNHWNSSLKRKLATATDGGE 120 121 IDRPCKRVSPGPGSPTGSERSELSHGGCGSGSGGGQVFRPVPRPGGFDAISAADVVRPPR 180 181 RRDDNDDDGDDDPLTSLSLSLSLPGFHHDSARSHFQELPSPSRSPSPPPSPPAASPSAYP 240 241 FNADLVSAMQEMIRTEVRNYMAGVGLRAGCGPGAVAESFMPQLVDGVMRAAAERVGVVTR 300 301 Q |
| Interface Residues: | 11, 45, 46, 47, 48, 50, 51, 55, 56, 97, 98, 101, 102, 105, 106, 107, 112 |
| 3D-footprint Homologues: | 1vfc_A, 3osg_A, 2kdz_A, 7xur_A, 3zqc_A, 5eyb_B, 6kks_A, 7c4r_A, 1mse_C, 8ity_W |
| Binding Motifs: | M1362_1.02 wgACMGkTAw |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.