Transcription Factor
| Accessions: | T044419_1.02 (CISBP 1.02) |
| Names: | T044419_1.02;, ZIC3 |
| Organisms: | Homo sapiens |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | family:C2H2 ZF |
| Length: | 457 |
| Pfam Domains: | 297-322 Zinc finger, C2H2 type 301-322 C2H2-type zinc finger 315-340 Zinc-finger double domain 328-352 C2H2-type zinc finger 328-352 Zinc finger, C2H2 type 344-371 Zinc-finger double domain 358-382 C2H2-type zinc finger 376-399 Zinc-finger double domain 388-408 Zinc finger, C2H2 type 388-408 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MTMLLDGGPQFPGLGVGSFGAPRHHEMPNREPAGMGLNPFGDSTHAAAAAAAAAAFKLSP 60 61 AAAHDLSSGQSSAFTPQGSGYANALGHHHHHHHHHHHTSQVPSYGGAASAAFNSTREFLF 120 121 RQRSSGLSEAASGGGQHGLFAGSASSLHAPAGIPEPPSYLLFPGLHEQGAGHPSPTGHVD 180 181 NNQVHLGLRGELFGRADPYRPVASPRTDPYAAGAQFPNYSPMNMNMGVNVAAHHGPGAFF 240 241 RYMRQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE 300 301 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 360 361 EFEGCDRRFANSSDRKKHMHVHTSDKPYICKVCDKSYTHPSSLRKHMKCCPAWYPGQSLI 420 421 PDEELDTDVGMQQPALHNTTYPKCRVNAEPTVQEMIY |
| Interface Residues: | 242, 243, 244, 274, 276, 277, 280, 310, 311, 312, 313, 314, 316, 317, 321, 328, 340, 341, 342, 343, 344, 346, 347, 348, 349, 350, 352, 353, 356, 365, 370, 371, 372, 373, 374, 375, 376, 377, 378, 381, 398, 399, 400, 401, 402, 404, 405 |
| 3D-footprint Homologues: | 5v3j_F, 6wmi_A, 5yel_A, 1ubd_C, 7w1m_H, 8cuc_F, 7n5w_A, 1tf3_A, 2gli_A, 1g2f_F, 8ssq_A, 1tf6_A, 6ml4_A, 5kkq_D, 8ssu_A, 4x9j_A, 5kl3_A, 5ei9_F, 7eyi_G, 8h9h_G, 7ysf_A, 5k5i_A, 2lt7_A, 2i13_A, 8gn3_A, 6e94_A, 2kmk_A, 6jnm_A, 3uk3_C, 7y3l_A, 5und_A, 1llm_D, 6blw_A, 2v6e_B, 1mey_C, 6u9q_A, 7txc_E, 4m9v_C, 7y3m_I, 6a57_A, 2jpa_A, 6sjf_B, 2wbs_A, 1f2i_J, 5yj3_D, 2drp_D |
| Binding Motifs: | M4149_1.02 yGGGkggtc |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.