Transcription Factor
| Accessions: | Q4H2N1 (JASPAR 2024) |
| Names: | Q4H2N1_CIOIN |
| Organisms: | Ciona intestinalis |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q4H2N1 |
| Length: | 325 |
| Pfam Domains: | 208-263 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MDISLDQALEQSEKHQDDLDDDSSELMQDVNVGEGLVTEDSEVGEVQGQEGLQTYQFRSG 60 61 DNGQVTYRVVQVGSEDNQQATLSIVTTNGIHNMLNQDAGGSGSPQVAIVTNPFNGDAEGA 120 121 GQSGDSDNSSAKFAYFSSGNPGNTQEIASGSESQDPQNVTGGQFYVMMSPQDMLQSNQVG 180 181 RSLAPRNHFVQKVDNSRSGGLVVRDTTRRVQHNEVERRRRDRINNWIMKLSKLVPDCQGD 240 241 HTKQGQSKGGILSKTCEYILDLQSSNQRLSDRMKGYERLQLDYEVLRVQMEEKKQENNIL 300 301 RQMLQSHGIEVAITNTSNNNQNQQQ |
| Interface Residues: | 209, 211, 212, 213, 215, 216, 219, 220, 246, 248 |
| 3D-footprint Homologues: | 2ypa_A, 1a0a_B, 1an4_A, 4h10_A, 7rcu_E, 5gnj_I, 8osl_O, 6g1l_A, 4h10_B, 7ssa_L, 5i50_B, 7d8t_A, 4zpk_A, 5nj8_D, 7f2f_B, 5eyo_A, 1am9_A, 7xi3_A, 5v0l_A, 8osl_P, 2ypa_B, 7xhv_B |
| Binding Motifs: | MA1926.1 ahwrrtCACGTGayhwrawa MA1926.2 CACGTGay |
| Publications: | Russo MT, Donizetti A, Locascio A, D'Aniello S, Amoroso A, Aniello F, Fucci L, Branno M. Regulatory elements controlling Ci-msxb tissue-specific expression during Ciona intestinalis embryonic development. Dev Biol 267:517-28 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.