Transcription Factor
| Accessions: | T13669 (AthalianaCistrome v4_May2016) |
| Names: | AT3G18990, T13669;, VRN1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:ABI3-VP1 |
| Length: | 341 |
| Pfam Domains: | 5-96 B3 DNA binding domain 244-332 B3 DNA binding domain |
| Sequence: (in bold interface residues) | 1 MPRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIW 60 61 FQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRA 120 121 RLFEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIP 180 181 KKRGRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPT 240 241 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAEKQWPVRCLYKAGRAKFS 300 301 QGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNEYV |
| Interface Residues: | 251, 256, 257, 258, 260, 293, 295, 296, 298 |
| 3D-footprint Homologues: | 7et6_A |
| Binding Motifs: | M0002 ttttTTTTTTTTTTTTTTTTTTTTTTkTy M0006 swktTTTTTTTTTTTTtkk |
| Related annotations: | PaperBLAST |
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