Transcription Factor
| Accessions: | T10638 (AthalianaCistrome v4_May2016), Q8GXC2 (JASPAR 2024) |
| Names: | AT2G20400, T10638;, Myb family transcription factor PHL4, PHL4_ARATH, Protein PHR1-LIKE 4 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:G2-like |
| Length: | 397 |
| Pfam Domains: | 233-284 Myb-like DNA-binding domain 315-361 MYB-CC type transfactor, LHEQLE motif |
| Sequence: (in bold interface residues) | 1 MIPNDDDDANSMKNYPLNDDDANSMKNYPLNDDDANSMENYPLRSIPTELSHTCSLIPPS 60 61 LPNPSEAAADMSFNSELNQIMARPCDMLPANGGAVGHNPFLEPGFNCPETTDWIPSPLPH 120 121 IYFPSGSPNLIMEDGVIDEIHKQSDLPLWYDDLITTDEDPLMSSILGDLLLDTNFNSASK 180 181 VQQPSMQSQIQQPQAVLQQPSSCVELRPLDRTVSSNSNNNSNSNNAAAAAKGRMRWTPEL 240 241 HEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQKYRTAKYIPVPSEGSPEAR 300 301 LTPLEQITSDDTKRGIDITETLRIQMEHQKKLHEQLESLRTMQLRIEEQGKALLMMIEKQ 360 361 NMGFGGPEQGEKTSAKTPENGSEESESPRPKRPRNEE |
| Interface Residues: | 233, 273, 274, 277, 278, 281, 282 |
| 3D-footprint Homologues: | 6j5b_C, 6qec_A, 7d3t_D |
| Binding Motifs: | M0389 aarGAATATTCbrww M0402 mGAATATkCywTdwkbwywyswrwmwrwt MA2023.1 aaarGAATATTCcwtww MA2023.2 rGAATATTCc |
| Binding Sites: | MA2023.1.1 MA2023.1.10 MA2023.1.11 MA2023.1.12 MA2023.1.13 MA2023.1.14 MA2023.1.15 MA2023.1.16 MA2023.1.17 MA2023.1.18 MA2023.1.19 MA2023.1.2 MA2023.1.20 MA2023.1.3 MA2023.1.4 MA2023.1.5 MA2023.1.6 MA2023.1.7 MA2023.1.8 MA2023.1.9 MA2023.2.11 / MA2023.2.13 MA2023.2.12 / MA2023.2.14 MA2023.2.15 / MA2023.2.16 / MA2023.2.18 / MA2023.2.19 / MA2023.2.5 / MA2023.2.6 MA2023.2.2 MA2023.2.1 MA2023.2.10 MA2023.2.17 MA2023.2.20 MA2023.2.3 / MA2023.2.7 MA2023.2.4 / MA2023.2.8 MA2023.2.9 |
| Publications: | Wang Z, Zheng Z, Song L, Liu D. Functional Characterization of Arabidopsis PHL4 in Plant Response to Phosphate Starvation. Front Plant Sci : (2018). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.