Transcription Factor
| Accessions: | T116785_1.02 (CISBP 1.02), Q8VZS3 (JASPAR 2024), T06046 (AthalianaCistrome v4_May2016) |
| Names: | AT1G68670, T116785_1.02;, HHO2_ARATH, MYB-domain transcription factor HHO2, Protein HRS1 HOMOLOG 2, Transcription factor HHO2, T06046; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:Myb/SANT, ecotype:Col-0, experiment type: DAP-seq, family:G2-like |
| Length: | 354 |
| Pfam Domains: | 217-268 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MMVEMDYAKKMQKCHEYVEALEEEQKKIQVFQRELPLCLELVTQAIEACRKELSGTTTTT 60 61 SEQCSEQTTSVCGGPVFEEFIPIKKISSLCEEVQEEEEEDGEHESSPELVNNKKSDWLRS 120 121 VQLWNHSPDLNPKEERVAKKAKVVEVKPKSGAFQPFQKRVLETDLQPAVKVASSMPATTT 180 181 SSTTETCGGKSDLIKAGDEERRIEQQQSQSHTHRKQRRCWSPELHRRFLNALQQLGGSHV 240 241 ATPKQIRDHMKVDGLTNDEVKSHLQKYRLHTRRPAATSVAAQSTGNQQQPQFVVVGGIWV 300 301 PSSQDFPPPSDVANKGGVYAPVAVAQSPKRSLERSCNSPAASSSTNTNTSTPVS |
| Interface Residues: | 217, 257, 258, 261, 262, 265, 266 |
| 3D-footprint Homologues: | 6qec_A, 7d3t_D, 6j5b_C |
| Binding Motifs: | M1321_1.02 rkrGaATctw M0387 / MA1390.1 gaATcaaAGATTC MA1390.2 hdAAGATTCcawww MA1390.3 AAGATTCc |
| Binding Sites: | MA1390.3.15 / MA1390.3.20 MA1390.3.4 MA1390.3.2 MA1390.1.1 MA1390.1.10 MA1390.1.11 MA1390.1.12 MA1390.1.13 MA1390.1.14 MA1390.1.15 MA1390.1.16 MA1390.1.17 MA1390.1.18 MA1390.1.19 MA1390.1.2 MA1390.1.20 MA1390.1.3 MA1390.1.4 MA1390.1.5 MA1390.1.6 MA1390.1.7 MA1390.1.8 MA1390.1.9 MA1390.2.1 MA1390.2.10 MA1390.2.11 MA1390.2.12 MA1390.2.13 MA1390.2.14 MA1390.2.15 MA1390.2.16 MA1390.2.17 MA1390.2.18 MA1390.2.19 MA1390.2.2 MA1390.2.20 MA1390.2.3 MA1390.2.4 MA1390.2.5 MA1390.2.6 MA1390.2.7 MA1390.2.8 MA1390.2.9 MA1390.3.1 MA1390.3.5 / MA1390.3.6 MA1390.3.16 MA1390.3.7 MA1390.3.10 MA1390.3.11 MA1390.3.12 MA1390.3.13 / MA1390.3.18 MA1390.3.14 MA1390.3.17 / MA1390.3.9 MA1390.3.19 MA1390.3.3 MA1390.3.8 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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