Transcription Factor

						

			
Accessions: T161761_1.02 (CISBP 1.02)

			
Names: aod-5, T161761_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Zinc cluster
Length: 740
Pfam Domains:   480-523 PAS fold
Sequence: 
(in bold interface residues)		   1 MPDDVGPAEAEVSGAVSESDNEYDETEVTTKDDDDEKMAERSVASEGVETNGDQKKKYDP   60
  61 KDPLRPRRKKARRACYACQRAHLTCGDERPCQRCIKRGLAEACQDGVRKKAKYLHDAPPE  120
 121 ALRPVLGPNYNPAAAVSVRNGHRHPSNAGSDAGSSIGTFYSQSTQYPVFSSAATQLGSIP  180
 181 ENLPFPQQSPVSPTFQPSSNPQLGSIGVSSVSSPMNSFPPALFDPSNPAIFNFNLEGLNF  240
 241 GSQYGAMEFGMLGHMSSGAAETPPRDPSMAQQGTSDVGFNPSGVFGNGLNQFEKVYDNNT  300
 301 GLISDFLTLDAHSNGLYSQGNLQHGLPHAYAIPAGPTSLQSPSTENNSPQPTGFGFESPT  360
 361 ATNYTGVPGAAGNQPGSQQPRAQKPKTPALGKLGPQSVLGKRQRDPSSIYEAVKEPFQYV  420
 421 ASFHKLISLLQNRFSGASTISIVRSLASIRPSFMSCMKTLNRADLIFMEKSFQRALFEHE  480
 481 EFMHQSPSPAIACRRTGEIAAVNKEFTALTGWTKDVLLGKTLNLNANMGGTNSDTLSISS  540
 541 KGGRGGIVGTTPRLKPLHPEQGTNADSQQQQSQQHKEQPQPVFLAELMDEASVTQFYEDY  600
 601 AQLAFTHSRGTVVRKCRLLKYRTQENMDAAAAAAAAASAPTASGGSGSSNGTVVNGGPDS  660
 661 SPAGKTEKERPTGVNVASNSILSNRVAKIDGEHGISKLERDGKLECSYTWTIKRDVFDIP  720
 721 MIIMINFLPCYYRSHNQLAV
Interface Residues: 70, 81, 82, 83
3D-footprint Homologues: 6o19_A, 1hwt_C, 1zme_D, 6gys_C
Binding Motifs: M1735_1.02 wwwwyCCGaw
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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