Transcription Factor
| Accessions: | E9JUM2 (JASPAR 2024) |
| Names: | E9JUM2_SOLLC |
| Organisms: | Solanum lycopersicum |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | E9JUM2 |
| Length: | 269 |
| Pfam Domains: | 36-85 SRF-type transcription factor (DNA-binding and dimerisation domain) 103-200 K-box region |
| Sequence: (in bold interface residues) | 1 MVFPINQELLVDESSSQLRKTSGGTGGGGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAY 60 61 ELSVLCDAEVSLIVFSSRGRLYEYANNSVRATIDRYKKHHADSTSTGSVSEANTQYYQQE 120 121 ASKLRRQIRDIQTYNRQIVGEALGSLSPRDLKNLEGKLEKAIGRVRSKKNELLFSEIELM 180 181 QKREIELQNANMYLRAKIAEVERAQEQMNLMPGGGGGGGGGGGGGSDHQYHHQPNYEDAR 240 241 NNFLPVNLLEPNPHYSRRDNGDQTPLQLV |
| Interface Residues: | 30, 31, 42, 45, 46, 50 |
| 3D-footprint Homologues: | 8q9p_B, 1c7u_A, 1n6j_A, 8q9q_A, 1egw_B, 7xuz_H, 8q9r_F, 1hbx_A, 8q9n_B, 1mnm_A |
| Binding Motifs: | UN0426.1 waagAAAAAGGaa UN0426.2 agAAAAAGG |
| Binding Sites: | UN0426.1.1 UN0426.1.10 / UN0426.1.12 UN0426.1.11 / UN0426.1.13 UN0426.1.12 / UN0426.1.14 UN0426.1.13 / UN0426.1.17 UN0426.1.14 / UN0426.1.19 UN0426.1.15 UN0426.1.16 UN0426.1.17 UN0426.1.18 UN0426.1.19 UN0426.1.2 / UN0426.1.3 UN0426.1.20 UN0426.1.3 / UN0426.1.5 UN0426.1.4 / UN0426.1.6 UN0426.1.5 / UN0426.1.7 UN0426.1.6 / UN0426.1.8 UN0426.1.7 / UN0426.1.9 UN0426.1.10 / UN0426.1.8 UN0426.1.11 / UN0426.1.9 UN0426.1.15 UN0426.1.16 UN0426.1.18 UN0426.1.2 UN0426.1.20 UN0426.1.4 UN0426.2.1 / UN0426.2.9 UN0426.2.10 / UN0426.2.15 / UN0426.2.19 / UN0426.2.20 UN0426.2.11 UN0426.2.12 / UN0426.2.5 UN0426.2.13 UN0426.2.14 / UN0426.2.4 / UN0426.2.6 UN0426.2.16 UN0426.2.17 UN0426.2.18 UN0426.2.2 UN0426.2.3 / UN0426.2.7 UN0426.2.8 |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.