Transcription Factor
| Accessions: | T14167 (AthalianaCistrome v4_May2016), Q9LDI5 (JASPAR 2024) |
| Names: | AT3G02940, MYB107, T14167;, Myb domain protein 107, MYB transcription factor, Putative MYB family transcription factor, Putative transcription factor, Q9LDI5_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 321 |
| Pfam Domains: | 14-61 Myb-like DNA-binding domain 17-76 Myb-like DNA-binding domain 67-111 Myb-like DNA-binding domain 70-116 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MGRSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60 61 LRPDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMG 120 121 IDPVTHRPRTDHLNVLAALPQLLAAANFNNLLNLNQNIQLDATSVAKAQLLHSMIQVLSN 180 181 NNTSSSFDIHHTTNNLFGQSSFLENLPNIENPYDQTQGLSHIDDQPLDSFSSPIRVVAYQ 240 241 HDQNFIPPLISTSPDESKETQMMVKNKEIMKYNDHTSNPSSTSTFTQDHQPWCDIIDDEA 300 301 SDSYWKEIIEQTCSEPWPFRE |
| Interface Residues: | 14, 49, 50, 51, 52, 54, 55, 58, 59, 60, 102, 105, 106, 109, 246 |
| 3D-footprint Homologues: | 1vfc_A, 1w0t_A, 2kdz_A, 7xur_A, 1y8z_A |
| Binding Motifs: | M0514 wwrkTwGGTgrrcwawyt M0520 wwgyyyACCwAmYw MA2007.1 / UN0366.1 yyCACCAAACwhw MA2007.2 CACCAAAC |
| Binding Sites: | MA2007.2.14 / MA2007.2.9 MA2007.1.1 / UN0366.1.1 UN0366.1.10 UN0366.1.11 MA2007.1.4 / UN0366.1.12 MA2007.1.5 / UN0366.1.13 MA2007.1.6 / UN0366.1.14 UN0366.1.15 UN0366.1.16 UN0366.1.17 UN0366.1.18 UN0366.1.19 UN0366.1.2 UN0366.1.20 UN0366.1.3 MA2007.1.2 / UN0366.1.4 UN0366.1.5 UN0366.1.6 UN0366.1.7 UN0366.1.8 MA2007.1.3 / UN0366.1.9 MA2007.1.10 MA2007.1.11 MA2007.1.12 MA2007.1.13 MA2007.1.14 MA2007.1.15 MA2007.1.16 MA2007.1.17 MA2007.1.18 MA2007.1.19 MA2007.1.20 MA2007.1.7 MA2007.1.8 MA2007.1.9 MA2007.2.1 / MA2007.2.13 / MA2007.2.3 / MA2007.2.6 MA2007.2.10 / MA2007.2.11 / MA2007.2.4 MA2007.2.12 / MA2007.2.16 / MA2007.2.17 / MA2007.2.19 / MA2007.2.20 MA2007.2.15 MA2007.2.18 / MA2007.2.7 MA2007.2.2 / MA2007.2.8 MA2007.2.5 |
| Publications: | Romero I., Fuertes A., Benito M. J., Malpica J., Leyva A., Paz-Ares J. More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J. 14:273-284 (1998). [Pubmed] |
| Related annotations: | PaperBLAST |
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