Transcription Factor

						

			
Accessions: T017941_1.02 (CISBP 1.02)

			
Names: NCU03077, T017941_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:bHLH
Length: 422
Pfam Domains:   155-205 Helix-loop-helix DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MPSQRSLPTPVSSADMKAQEPPTLASLQMLFELPPPAIMPSNAAGTPPQTPEKRYPMQPS   60
  61 ETVKSRRRAATVTGPSRNDFALPPPPTRSRKIIQMKPREVAVAPRPASTSKDSTTGRSGS  120
 121 DLASTTTKPVSTTPPATTGGATKKQSTAAGRKIARKTAHSLIERRRRSKMNEEFALLKSM  180
 181 IPACTGEMHKLAILQASIEYIRYLEDCVAKLQARHQSSPLQEESGIKSLPTPSGHEPFHP  240
 241 ETVFSFEARQEVRLDGDVEMSDSSGDDSPASSPPLAAITSSHQPSASPGMPPQQPLRDRH  300
 301 DSISLALTSTDYQRHYSFSGSSVIASPAGFGSEGQHLYGGNSNMHDTRAASISGLTLTSP  360
 361 YLVARNDLDHEATAALLMLNQQTQPDRRMSTTNIDRPAEAAATASGTVRTGRGMSVRDLL  420
 421 SA
Interface Residues: 156, 158, 159, 160, 162, 163, 166, 167, 188, 190
3D-footprint Homologues: 7z5k_B, 1an4_A, 7d8t_A, 5gnj_I, 1am9_A, 5v0l_A, 4h10_B, 7f2f_B, 5i50_B, 8hov_A, 4zpk_A, 7ssa_L, 8ia3_B, 6g1l_A, 5eyo_A, 7xi3_A, 5nj8_D, 4h10_A, 8osl_P, 2ql2_A, 8osb_B, 8osl_O, 5nj8_C, 5v0l_B
Binding Motifs: M0235_1.02 rkCACGtg
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.