Transcription Factor
| Accessions: | T061509_1.02 (CISBP 1.02) |
| Names: | lin-29, T061509_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 455 |
| Pfam Domains: | 147-169 C2H2-type zinc finger 147-169 Zinc finger, C2H2 type 162-187 Zinc-finger double domain 177-198 C2H2-type zinc finger 178-198 Zinc finger, C2H2 type 190-216 Zinc-finger double domain 204-226 Zinc finger, C2H2 type 234-256 C2H2-type zinc finger 265-287 Zinc finger, C2H2 type 265-287 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MDQTVLDSAFNSPVDSGIAGTTTGSGSTTHFGVGTNLRSSSRSTDGTDSTDGANSDNVTG 60 61 STGSTPAHHSITNLNMALSQHSIDSATAASSTNPFPHFNQADLLNFHQNSLLPHHMFSQF 120 121 GRYPQFEQKPDVGVLQQQMQMREAKPYKCTQCVKAFANSSYLSQHMRIHLGIKPFGPCNY 180 181 CGKKFTQLSHLQQHIRTHTGEKPYKCKFTGCDKAFSQLSNLQSHSRCHQTDKPFKCNSCY 240 241 KCFTDEQSLLDHIPKHKESKHLKIHICPFCGKSYTQQTYLQKHMTKHADRSKASNFGNDV 300 301 VPADPFDPSLLSWNPMQGMGDNAHDSSSFNISSLTDQFAANTMIGSQSTNYNPAFQNSAF 360 361 SQLFNIRNNRYLSEYPTSTKNGERAPGFNMITPLENIQRYNGSSSSATAVVTATGSAVVS 420 421 STPSSTSSSSAGSSSSQGGVFNPQSLINNMKNHSY |
| Interface Residues: | 134, 137, 138, 139, 141, 142, 147, 157, 158, 159, 160, 161, 163, 164, 165, 168, 186, 187, 188, 189, 190, 191, 192, 193, 194, 210, 216, 217, 218, 219, 220, 222, 223, 245, 246, 247, 248, 249, 250, 251, 255, 275, 276, 277, 278, 279, 282, 285 |
| 3D-footprint Homologues: | 5yel_A, 1ubd_C, 2jpa_A, 2kmk_A, 5v3j_F, 7n5w_A, 1tf3_A, 6jnm_A, 1g2f_F, 5k5l_F, 8ssu_A, 4x9j_A, 8gn3_A, 1llm_D, 5kkq_D, 5ei9_F, 1mey_C, 5kl3_A, 1f2i_J, 6wmi_A, 5k5i_A, 8ssq_A, 7w1m_H, 5und_A, 2gli_A, 7eyi_G, 8h9h_G, 4m9v_C, 2lt7_A, 2i13_A, 6e94_A, 7ysf_A, 6a57_A, 7y3l_A, 3uk3_C, 8cuc_F, 1tf6_A, 6ml4_A, 6blw_A, 6u9q_A, 7txc_E, 5yj3_D, 7y3m_I, 2wbs_A, 2drp_D |
| Binding Motifs: | M0493_1.02 gAAAAAAa |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.