Transcription Factor

						

			
Accessions: T073814_1.02 (CISBP 1.02)

			
Names: AT3G04850, T073814_1.02;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:CxC
Length: 639
Pfam Domains:   451-489 Tesmin/TSO1-like CXC domain
  536-575 Tesmin/TSO1-like CXC domain
Sequence: 
(in bold interface residues)		   1 MDTPDKNRISAVSFCNFEDSPVFQYINDLSPIEPVKPGRPENILHSLVFTSPSSSSSLFC   60
  61 SPQLNSYRDSRFFIKRHRSLDLSSPVVLIGETLKNSPDALWEEKLKCRPEKLENVSEPKP  120
 121 FKEQISLAIELANSLKHGRDGCDIQMVSCDEVPMDADDEIGSGGGSRELSDELCRQSFDP  180
 181 LDFDADSDGVLHTDEMEAESGFGKEVIMFDVADIQNYEQQIPRTTDPRFYSLASEPQQFS  240
 241 IYCNNSNYVEEREGSCSVQVAAGAPDINLSCSSKVAAIDSTAEAEDKEDKDLQPSGKQRS  300
 301 VRRRCLTFDMGGSHKRIPLRDSTNDLPLDSTSINKAPSPQNCLDTSKQDTDEILPIPRTI  360
 361 GLHLNGFVNPSVSSGRKKKKIKDGQAFPSTTFHYNIEDEFSTPVSTKRDLVVFSDVKIME  420
 421 PPERSVEGECFDQLMAMENRQLSQGLDELGSCKRCKCRKSQCLKLYCECFSAGLFCGEPC  480
 481 SCQNCFNKPIHEDLVMKSREVIKARNPLAFAPKVVSTSDTVIDLWVENSKTPASARHKRG  540
 541 CNCRKSGCSKKYCECFMMGVGCSSNCRCMGCKNTFGHTNEQCAGDSDVVTINDEAKHYGD  600
 601 HGDASRQNEEILTSERNRLLLPGSVAFRSLTSLSNLSEL
Interface Residues: 435, 440, 466, 472, 552
3D-footprint Homologues: 8amd_A, 5fd3_A
Binding Motifs: M0589_1.02 awTTyrAAwt
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.