Transcription Factor
| Accessions: | P93024 (JASPAR 2024), T05933 (AthalianaCistrome v4_May2016) |
| Names: | ARFE_ARATH, Auxin response factor 5, Auxin-responsive protein IAA24, Transcription factor MONOPTEROS, AT1G19850, MP, T05933; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:ARF |
| Length: | 902 |
| Pfam Domains: | 158-259 B3 DNA binding domain 284-367 Auxin response factor 725-882 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MMASLSCVEDKMKTSCLVNGGGTITTTTSQSTLLEEMKLLKDQSGTRKPVINSELWHACA 60 61 GPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNVTLHADKD 120 121 SDEIYAQMSLQPVHSERDVFPVPDFGMLRGSKHPTEFFCKTLTASDTSTHGGFSVPRRAA 180 181 EKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGD 240 241 SVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNP 300 301 RACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPG 360 361 SKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSLTSGLKRQLHPSYFAGETEWGS 420 421 LIKRPLIRVPDSANGIMPYASFPSMASEQLMKMMMRPHNNQNVPSFMSEMQQNIVMGNGG 480 481 LLGDMKMQQPLMMNQKSEMVQPQNKLTVNPSASNTSGQEQNLSQSMSAPAKPENSTLSGC 540 541 SSGRVQHGLEQSMEQASQVTTSTVCNEEKVNQLLQKPGASSPVQADQCLDITHQIYQPQS 600 601 DPINGFSFLETDELTSQVSSFQSLAGSYKQPFILSSQDSSAVVLPDSTNSPLFHDVWDTQ 660 661 LNGLKFDQFSPLMQQDLYASQNICMSNSTTSNILDPPLSNTVLDDFCAIKDTDFQNHPSG 720 721 CLVGNNNTSFAQDVQSQITSASFADSQAFSRQDFPDNSGGTGTSSSNVDFDDCSLRQNSK 780 781 GSSWQKIATPRVRTYTKVQKTGSVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSG 840 841 WKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSAGINDLKTS 900 901 VS |
| Interface Residues: | 163, 165, 170, 171, 172, 173, 174, 175, 215, 216, 217, 218, 220, 221, 622, 626, 629, 671, 675, 678, 688, 690, 691, 713, 715 |
| 3D-footprint Homologues: | 6j9b_A, 6sdg_B, 3hqf_A, 6ycq_A, 6fas_B, 7et6_A, 7r8i_A |
| Binding Motifs: | MA0943.1 rCCGACAa M0140 rCCGACAArw MA0943.2 rCCGACA |
| Binding Sites: | MA0943.1.1 MA0943.1.10 MA0943.1.11 MA0943.1.12 MA0943.1.13 MA0943.1.14 MA0943.1.15 / MA0943.1.19 MA0943.1.16 MA0943.1.17 MA0943.1.18 MA0943.1.2 MA0943.1.20 MA0943.1.3 MA0943.1.4 MA0943.1.5 MA0943.1.6 MA0943.1.7 MA0943.1.8 MA0943.1.9 MA0943.2.9 MA0943.2.1 MA0943.2.10 MA0943.2.11 MA0943.2.12 MA0943.2.13 MA0943.2.14 MA0943.2.15 / MA0943.2.19 MA0943.2.16 MA0943.2.17 MA0943.2.18 MA0943.2.2 MA0943.2.20 MA0943.2.3 MA0943.2.4 MA0943.2.5 MA0943.2.6 MA0943.2.7 MA0943.2.8 |
| Publications: | Zhang JY, He SB, Li L, Yang HQ. Auxin inhibits stomatal development through MONOPTEROS repression of a mobile peptide gene STOMAGEN in mesophyll. Proc Natl Acad Sci U S A : (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.