Transcription Factor

						

			
Accessions: Q4H2Y9 (JASPAR 2024)

			
Names: Q4H2Y9_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H2Y9
Length: 303
Pfam Domains:   234-290 Homeobox domain
  257-286 Homeobox KN domain
Sequence: 
(in bold interface residues)		   1 MDIGGKILPDLRGLPQLDFLRQMAERNVSSTSKELQVRTHEAWQQYLKSCTVPVTLEWLI   60
  61 ALGFPMPSFPHYQRCFTQKNEGNVAMARPWFQTGLQYNNISESETLSSEEQSTSNSEHLL  120
 121 RFKSLPRSTAATVHDLPAADGAVPFMKHIKLNQSDNNAANVSLKDTKHSVQHRGTSKREI  180
 181 QPTQSVSGEVFSSAICWQGEVPQSRAVGSSFTQARQHGHRPNADKHFLNFHQQRRSRTRF  240
 241 SSEQLSILESAFSLGHYPPVGVREKLASRTGLTEARVQVWFSNRRAKWRRMQPSLNPNDE  300
 301 LRP
Interface Residues: 233, 234, 235, 236, 237, 239, 275, 276, 278, 279, 282, 283, 286, 287, 289, 290
3D-footprint Homologues: 4j19_B, 1ig7_A, 5jlw_D, 4cyc_A, 2h1k_B, 1puf_A, 5zfz_A, 3cmy_A, 1fjl_B, 6a8r_A, 3d1n_M, 1jgg_B, 6m3d_C, 3lnq_A, 2lkx_A, 1nk2_P, 1zq3_P, 6es3_K, 2ld5_A, 7q3o_C, 4xrs_G, 3l1p_A, 3a01_E, 2h8r_B, 5flv_I, 1puf_B, 5zjt_E, 1au7_A, 2hdd_A, 7psx_B, 5hod_A, 3rkq_B, 2r5y_A, 1b72_A, 2hos_A, 1le8_B, 1mnm_C, 1k61_B, 2xsd_C, 7xrc_C, 1e3o_C, 1le8_A, 1du0_A, 8g87_X, 4qtr_D, 4xrm_B, 1o4x_A
Binding Motifs: UN0463.1 wwwawwaATTGATtwwttww
MA2114.1 ATTGAT
			
Publications: Wada S, Tokuoka M, Shoguchi E, Kobayashi K, Di Gregorio A, Spagnuolo A, Branno M, Kohara Y, Rokhsar D, Levine M, Saiga H, Satoh N, Satou Y. A genomewide survey of developmentally relevant genes in Ciona intestinalis. II : (Genes). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.