Transcription Factor
| Accessions: | T015149_1.02 (CISBP 1.02) |
| Names: | Arnt, T015149_1.02; |
| Organisms: | Mus musculus |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:bHLH |
| Length: | 760 |
| Pfam Domains: | 76-127 Helix-loop-helix DNA-binding domain 151-254 PAS fold 354-424 PAS fold 355-449 PAS domain 359-445 PAS fold |
| Sequence: (in bold interface residues) | 1 MAATTANPEMTSDVPSLGPTIASGNPGPGIQGGGAVVQRAIKRRSGLDFDDEVEVNTKFL 60 61 RCDDDQMCNDKERFARENHSEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMA 120 121 VSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTP 180 181 VLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRVLDLKTGTVKKEGQQSSMRM 240 241 CMGSRRSFICRMRCGTSSVDPVSMNRLSFLRNRCRNGLGSVKEGEPHFVVVHCTGYIKAW 300 301 PPAGVSLPDDDPEAGQGSKFCLVAIGRLQVTSSPNCTDMSNICQPTEFISRHNIEGIFTF 360 361 VDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKTRE 420 421 WLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQEPRPTLSNTIPRSQLGPTANLSLEMG 480 481 TGQLPSRQQQQQHTELDMVPGRDGLASYNHSQVSVQPVASAGSEHSKPLEKSEGLFAQDR 540 541 DPRFPEIYPSITADQSKGISSSTVPATQQLFSQGSSFPPNPRPAENFRNSGLTPPVTIVQ 600 601 PSSSAGQILAQISRHSNPAQGSAPTWTSSSRPGFAAQVPTQATAKTRSSQFGVNNFQTSS 660 661 SFSAMSLPGAPTASSAPETGQTTGQFQARTAEGVGVWPQWQGQQPHHRSSSSEQHVQQTQ 720 721 AQAPSQPEVFQEMLSMLGDQSNTYNNEEFPDLTMFPPFSE |
| Interface Residues: | 76, 78, 79, 80, 82, 83, 86, 87, 113 |
| 3D-footprint Homologues: | 1a0a_B, 1an4_A, 4zpk_A, 8osl_O, 6g1l_A, 5gnj_I, 7xi3_A, 5sy7_B, 4zpk_B, 7d8t_A, 5i50_B, 4h10_A, 5v0l_A, 4zpr_B, 7ssa_L, 4h10_B, 8ia3_B, 5eyo_A, 1am9_A, 5nj8_D, 8osl_P, 5nj8_C, 7xi3_B, 7xhv_B, 5v0l_B |
| Binding Motifs: | M0179_1.02 artCACGTGmwt |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.