Transcription Factor
| Accessions: | T27097 (AthalianaCistrome v4_May2016), F4KCL4 (JASPAR 2024) |
| Names: | AT5G09410, CAMTA1, T27097;, F4KCL4_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:CAMTA |
| Length: | 1066 |
| Pfam Domains: | 80-188 CG-1 domain 660-731 Ankyrin repeats (3 copies) 704-736 Ankyrin repeat 883-900 IQ calmodulin-binding motif 905-924 IQ calmodulin-binding motif |
| Sequence: (in bold interface residues) | 1 MARKKKSVSFSHLDIARNEGNKIISFSVHAYSDRLGFVDSLFDYESLRSLLVDFWVYPSM 60 61 VDRRSFGSITPPLQLDMEQLLSEAQHRWLRPTEICEILQNYHKFHIASESPTRPASGSLF 120 121 LFDRKVLRYFRKDGHNWRKKKDGKTIREAHEKLKVGSIDVLHCYYAHGEANENFQRRCYW 180 181 MLEQYYYRKASSHWVLVATLSLFSFGYLRPSWVRHLMHIVFVHYLEVKGNRTSIGMKENN 240 241 SNSVNGTASVNIDSTASPTSTLSSLCEDADTVLVQGIVNKQVPSYDHLLNLKLEIAMVGH 300 301 LLLACVMFHRFMGTESEKMQPSNTDSMLVEENSEKGGRLKAEHIRNPLQTQFNWQDDTDL 360 361 ALFEQSAQDNFETFSSLLGSENLQPFGISYQAPPSNMDSEYMPVMKILRRSEDSLKKVDS 420 421 FSKWAIKELGEMEDLQMQSSRGDIAWTTVECETAAAGISLSPSLSEDQRFTIVDFWPKSA 480 481 KTDAEVEVMVIGTFLLSPQEVTKYNWSCMFGEVEVPAEILVDGVLCCHAPPHTAGHVPFY 540 541 VTCSNRFACSEVREFDFLSGSTQKINATDVYGTYTNEASLQLRFEKMLAHRDFVHEHHIF 600 601 EDVGDKRRQISKIMLLKEEKEYLLPGTYQRDSTKQEPKGQLFRELFEEELYIWLIHKVTE 660 661 EGKGPNILDEDGQGILHFVAALGYDWAIKPVLAAGVNINFRDANGWSALHWAAFSGREET 720 721 VAVLVSLGADAGALTDPSPELPLGKTAADLAYANGHRGISGFLAESSLTSYLEKLTVDSK 780 781 ENSPANSCGEKAVQTVSERTAAPMTYGDVPEKLSLKDSLTAVRNATQAADRLHQVFRMQS 840 841 FQRKQLCDIGDDEKIDISDQLAVSFAASKTKNPGQGDVSLSCAATHIQKKYRGWKKRKEF 900 901 LLIRQRIVKIQAHVRGHQVRKQYRTVIWSVGLLEKIILRWRRKGNGLRGFKRNAVAKTVE 960 961 PEPPVSAICPRIPQEDEYDYLKEGRKQTEERLQKALTRVKSMVQYPEARDQYRRLLTVVE 1020 1021 GFRENEASSSASINNKEEEAVNCEEDDFIDIESLLNDDTLMMSISP |
| Interface Residues: | 969, 970, 972, 973, 986 |
| 3D-footprint Homologues: | 5fmf_V |
| Binding Motifs: | M0350 aAarCGCGTkdr UN0362.1 wwcAAAaCGCGTgaaw |
| Binding Sites: | UN0362.1.1 UN0362.1.10 UN0362.1.11 / UN0362.1.2 UN0362.1.12 UN0362.1.13 UN0362.1.14 UN0362.1.15 UN0362.1.16 UN0362.1.17 UN0362.1.18 / UN0362.1.3 UN0362.1.19 / UN0362.1.4 UN0362.1.2 UN0362.1.20 / UN0362.1.5 UN0362.1.3 UN0362.1.4 UN0362.1.5 UN0362.1.6 UN0362.1.1 / UN0362.1.7 UN0362.1.8 UN0362.1.9 UN0362.1.10 UN0362.1.11 UN0362.1.12 UN0362.1.13 UN0362.1.14 UN0362.1.15 UN0362.1.16 UN0362.1.17 UN0362.1.18 UN0362.1.19 UN0362.1.20 UN0362.1.6 UN0362.1.7 UN0362.1.8 UN0362.1.9 |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.