Transcription Factor
Accessions: | T123284_1.02 (CISBP 1.02) |
Names: | fgenesh1_pg.C_scaffold_2000096, T123284_1.02; |
Organisms: | Phytophthora ramorum |
Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
Notes: | experiment type:PBM, family:Myb/SANT |
Length: | 717 |
Pfam Domains: | 505-549 Myb-like DNA-binding domain 506-564 Myb-like DNA-binding domain 555-600 Myb-like DNA-binding domain 558-615 Myb-like DNA-binding domain 606-650 Myb-like DNA-binding domain 609-654 Myb-like DNA-binding domain |
Sequence: (in bold interface residues) | 1 MHPSLYYAKSGVLVGEQRQWLLGFQCAFFEESDQRDGHHHSSAAPVKIERGRTQQLMASA 60 61 RPQPTASATSAKAKPTPAKASKKRKANDAPAAFRASAAARDAARVSASCSLCGFGASTLD 120 121 HLLTHVRESHDQATPQMALPLEVAQMVVQRALDQAALGGATSAWLAAMQQQFSAAAEMTA 180 181 ALERRDAHGVAGAIRKLHGMTQTVDEKTLPTTLQEAAQILLQAPTALDAAPVPAVTIKQE 240 241 VPAHNGVTANAPPLKGKDSSIHEAEAAQALTGLRATASSAATTATLAAPTLTASSARPPA 300 301 VPKSSPQASFPSFPPLSITAPQPQLSSPRFHPPELFTPGSARSPSTPSSLPSLFARRLLA 360 361 PLASPSSATDPGDRLVQGVAGMVYQNPMIVTDQRNAMSSTIRQDTSPASLTPVYYSSFPL 420 421 SSNNAGVNSGASTNRRTSASPVKRKSITSKQLSVRCDAEVAAARAAASTAAAAAEAAGQL 480 481 GPLVPVSVPPGTPSTPATRKATPRRWTKEEDDALRTAVENHREKNWKAIAAQVPGRNHTQ 540 541 CLQRWTKVLAPGLVKGHWSPHEDELLRRLVATEQKNWGDVAAKIPGRTSKQCRERWHNHL 600 601 DPQIVRGAYTPEEDRLILEAQARLGNRWSVIAAMLPGRTEDAVKIRWKSHCRVWRARKYL 660 661 RKNPNSDVDMLSEPAQTPRTPLVPPTGDFKWPVPLLGTVTDEQESSTSKMSAEMDEE |
Interface Residues: | 500, 539, 540, 541, 542, 543, 546, 547, 555, 588, 589, 590, 591, 593, 594, 598, 599, 640, 641, 644, 645, 648, 649, 650 |
3D-footprint Homologues: | 1vfc_A, 5eyb_B, 1w0t_A, 7xur_A, 3osg_A, 2kdz_A, 6kks_A, 1mse_C, 3zqc_A |
Binding Motifs: | M1386_1.02 rrRKTCAGTk |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.