Transcription Factor
| Accessions: | T153668_1.02 (CISBP 1.02) |
| Names: | athp-1, T153668_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM |
| Length: | 1150 |
| Pfam Domains: | 61-105 PHD-finger |
| Sequence: (in bold interface residues) | 1 MQKKEKEGRRKLKYDSNDGLLPEIRRVCGFPHHISEELSARGSGKKKKQVEEEWKWPEAQ 60 61 ICGICSSGGNILCCEQCPASFHLACIGYESSDLPDDNFYCNRCRNLPENVRLFPPEKCSP 120 121 SVNPVLRVENENHRNWEAIEYHCNRLRDEEQAEKMKKDVAYGPKSEFAEIQDCFRDKNLL 180 181 KALGMANPMDYTIPPEFQADRDCFSGDAMEDKRPTIMGEVCAECNLKDDWTRMLKCDFCD 240 241 LIWHQKCVTPPLIHVRAYFYWMCPRHPETVIDSVLIGDEISREDRRRLYDKYADVEPSYE 300 301 IFEEFCIKTEQFRMKSEVFDSEEMYYDPEEASTSFMQTVIKPRQTSRKTTGRSASKKKSN 360 361 GRFFASSWDFPGLSSRETSPSRKNSRKSPDSVATERKDRVLDKIDKKRSIKLTEEEIIMS 420 421 IMPVEESSRAEYLTQKMLGTDIEQSTNFFNRHSAMIDRIRAFYGNLPEKELIKLMREDLD 480 481 PVETIRGGGTQSIISQNEKPYRKKLKADVEVLIQHVGLGTDSTERHFNSIGTEAFYRRCA 540 541 PPVTARNVLNQKTLREVVLNSQKEAHEGAGVYEYHAEPEQLENLVLLAYEPSFESPEDRD 600 601 TYFVPSMTIWSKEPICALTRKWAASGASKQAPPSSSSSEAPSVEAEVKEEVVEEEDEENE 660 661 ARMRRESTATSSIVYNNDTGPLEFIEENMPPPAATITEKSDPFDFSSLEMPEIHEKAETV 720 721 YEAEGYYGESDDLPLDLRRTKSESDLVDRIIWPLVRSALQNFIRREDCHQMHLEHNYSSL 780 781 YQTHDSDEENQPVVEVEKLITYEEYQENLYSAEFASPQTPPPIPPPPAVYYDNFSDAPRK 840 841 RGRPVGSRNRKEGDTTIPKQQRKRNPQPVGRGRGRGGGRPRGSRSSRGSMDDGGGSRRHS 900 901 TASDANESAELLNQPVTKQLRDEIKEIKLKYTKMMMDRGFEQAKDEYFRNRDAALSKWTP 960 961 EQWKEHNEQCVAARLSSLIPYDQRYFLPTQRVLARLDLEDGDLRLPAVHLPIAIQRCVTK 1020 1021 LGTAHDCHVRCDKLTGDAWCSVLADYHCDIVRDYYSDNFYISTLGTEAVFVDGRAVRRPR 1080 1081 LTPFEAAEKLRTRGSSTIIPPHIKCRCQKHSDLQISRQESTGELVRCGILKLEHGARIQI 1140 1141 GCVAFIFSRI |
| Interface Residues: | 504, 505, 510, 511, 514, 806, 808 |
| 3D-footprint Homologues: | 8b4h_A, 8ity_W |
| Binding Motifs: | M1672_1.02 mawwTAwwtk |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.