Transcription Factor
| Accessions: | T153908_1.02 (CISBP 1.02), T10281 (AthalianaCistrome v4_May2016), Q9ZQ12 (JASPAR 2024) |
| Names: | AtGRF6, T153908_1.02;, AT2G06200, T10281;, GRF6_ARATH, Growth-regulating factor 6, Transcription activator GRF6 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, AthalianaCistrome v4_May2016 2, JASPAR 2024 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:WRC, ecotype:Col-0, experiment type: DAP-seq, family:GRF |
| Length: | 244 |
| Pfam Domains: | 6-40 QLQ 80-124 WRC |
| Sequence: | MATRIPFTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSP TLSPHFGWNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSS RKPPPTQFTPNLFLDSSSRRRRSGYMDDFFSIEPSGSIKSCSGSAMEDNDDGSCRGINNE EKQPDRHCFILGTDLRTRERPLMLEEKLKQRDHDNEEEQGSKRFYRFLDEWPSSKSSVST SLFI |
| Binding Motifs: | M1677_1.02 hctGmmaa M0405 swrawwkTGTCAGA MA2016.1 ttCTGACAma MA2016.2 tCTGACA |
| Binding Sites: | MA2016.1.1 MA2016.1.10 / MA2016.1.20 MA2016.1.11 MA2016.1.12 MA2016.1.13 MA2016.1.14 MA2016.1.15 MA2016.1.16 MA2016.1.17 / MA2016.1.4 MA2016.1.18 MA2016.1.19 MA2016.1.2 MA2016.1.3 MA2016.1.5 MA2016.1.6 MA2016.1.7 MA2016.1.8 MA2016.1.9 MA2016.2.1 / MA2016.2.12 / MA2016.2.13 / MA2016.2.17 / MA2016.2.4 MA2016.2.10 / MA2016.2.11 / MA2016.2.15 / MA2016.2.16 / MA2016.2.18 / MA2016.2.19 / MA2016.2.2 / MA2016.2.20 / MA2016.2.3 / MA2016.2.5 / MA2016.2.8 MA2016.2.14 / MA2016.2.6 MA2016.2.7 / MA2016.2.9 |
| Publications: | Kim JS, Mizoi J, Kidokoro S, Maruyama K, Nakajima J, Nakashima K, Mitsuda N, Takiguchi Y, Ohme-Takagi M, Kondou Y, Yoshizumi T, Matsui M, Shinozaki K, Yamaguchi-Shinozaki K. Arabidopsis growth-regulating factor7 functions as a transcriptional repressor of abscisic acid- and osmotic stress-responsive genes, including DREB2A. Plant Cell 24:3393-405 (2012). [Pubmed] |
| Related annotations: | PaperBLAST |
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