Transcription Factor
| Accessions: | T037190_1.02 (CISBP 1.02) |
| Names: | odd-2, T037190_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 254 |
| Pfam Domains: | 124-146 C2H2-type zinc finger 124-146 Zinc finger, C2H2 type 138-162 Zinc-finger double domain 152-174 C2H2-type zinc finger 152-174 Zinc finger, C2H2 type 166-189 Zinc-finger double domain 180-202 C2H2-type zinc finger 180-202 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MLPWQRQVPTSIFPQSNEQVFRMMLAQQHLQLQNFLQQRKMALLAMNPEIPMITDLKKAK 60 61 FDFTHMADSIESEQKIKEESVSPKMSPTLTTAAVRPFVPYDQPWFMIPGRGRTTGRAARP 120 121 KKEFICKYCDRHFTKSYNLLIHERTHTDERPYSCDVCGKAFRRQDHLRDHKYIHQKDRPF 180 181 KCEICGKGFCQSRTLLVHRATHDPNRHSIGAPVVPIKSETPLPELDPRVTLILQNLTDSF 240 241 NSTSMTSPQISPDR |
| Interface Residues: | 68, 102, 104, 105, 106, 109, 110, 112, 113, 116, 124, 134, 135, 136, 137, 138, 140, 141, 142, 143, 144, 147, 159, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 173, 190, 191, 192, 193, 194, 195, 197 |
| 3D-footprint Homologues: | 3v4r_B, 1tf6_A, 2gli_A, 6wmi_A, 5yel_A, 8ssu_A, 2kmk_A, 7y3l_A, 5v3j_F, 7n5w_A, 3uk3_C, 1tf3_A, 6jnm_A, 8cuc_F, 6ml4_A, 2i13_A, 8gn3_A, 1llm_D, 6blw_A, 5kkq_D, 1ubd_C, 6u9q_A, 4x9j_A, 1mey_C, 5kl3_A, 2drp_D, 5ei9_F, 5und_A, 1g2f_F, 7eyi_G, 4m9v_C, 8h9h_G, 7y3m_I, 6e94_A, 7ysf_A, 2lt7_A, 6a57_A, 2jpa_A, 7w1m_H, 2wbs_A, 7txc_E, 1f2i_J, 5yj3_D, 8ssq_A, 5k5i_A |
| Binding Motifs: | M0384_1.02 mCrGTAGCa |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.