Transcription Factor
| Accessions: | T136033_1.02 (CISBP 1.02) |
| Names: | npax-1, T136033_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Paired box |
| Length: | 109 |
| Pfam Domains: | 10-107 'Paired box' domain 22-62 Helix-turn-helix domain 28-67 Homeodomain-like domain 29-67 Helix-turn-helix domain |
| Sequence: (in bold interface residues) | 1 MPLPMNSGEKVKAVGRSYNPGRPLCLEDRKKIVRLYEEGCRVSHIARLIGVTHSCVSKIM 60 61 SRYRRTGSVQPRSFRATENQENDNATWQQQQLKQQQKKEKPLPFSIERF |
| Interface Residues: | 20, 52, 53, 54, 55, 57, 58, 73, 74, 77, 80 |
| 3D-footprint Homologues: | 1k78_A, 1pdn_C, 6pax_A, 7b0c_A |
| Binding Motifs: | M1500_1.02 ayTGGAACrg |
| Related annotations: | PaperBLAST |
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