Transcription Factor
| Accessions: | T061503_1.02 (CISBP 1.02) |
| Names: | T061503_1.02;, ztf-19 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 470 |
| Pfam Domains: | 84-106 Zinc finger, C2H2 type 84-106 C2H2-type zinc finger 84-106 C2H2-type zinc finger 99-122 Zinc-finger double domain 111-132 C2H2-type zinc finger 112-134 Zinc finger, C2H2 type 112-132 Zinc-finger of C2H2 type 112-134 C2H2-type zinc finger 127-150 Zinc-finger double domain 140-154 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MENRTPMQHHSGYEIVKSEPPSTPKTLIKSSYMENTPEMVFGSFPIHSGFCTQVVTHTDP 60 61 MNNNNQPKTNANGRALAADRKRPYPCNLCSSKFGSKMELEEHQNSHTGQKPFECDTCNAR 120 121 FNRRSTLWNHKRIHSDAKPFVCTVCQMTFKWKNSLKCHKDMHQRKNETSAHLDNDLRQLT 180 181 YATAAKRKLQMEQEENGGLPASSSASSVISHPLITTTSGNKKRSKAAKAKQTPSSLATTL 240 241 SQVHLGAVQPLHASALVPPSDHQIDLDTTSLDSLMQSQNQNFLMQLYGYSDDGRHNGGML 300 301 SLDDTMLSNLSDSKSDSGSSSGGLSIQLPMQTINMLNFRNLGTQQLPPVHQLASSLPSVS 360 361 SGMDYVNVNQHDSHYIVSQPDMMLGNQPLYHNGSFANIEKSNPHNNQFTIDSCVLLPSSR 420 421 QDYPFDYTMVNQQYPMQEQVHDQTVGVSVVQQHYAEQAHAHGKTVPHEQW |
| Interface Residues: | 94, 95, 96, 97, 98, 100, 101, 102, 107, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 132, 133, 150, 151, 152, 153, 154, 155, 156, 157 |
| 3D-footprint Homologues: | 3uk3_C, 2kmk_A, 7n5w_A, 6jnm_A, 1tf3_A, 2jpa_A, 1f2i_J, 7ysf_A, 6ml4_A, 6blw_A, 5k5i_A, 1g2f_F, 6u9q_A, 1ubd_C, 5kkq_D, 1llm_D, 8gn3_A, 4x9j_A, 2gli_A, 5kl3_A, 7txc_E, 5ei9_F, 5v3j_F, 4m9v_C, 8h9h_G, 1tf6_A, 6e94_A, 2lt7_A, 7y3m_I, 6a57_A, 7w1m_H, 8cuc_F, 7y3l_A, 8ssq_A, 5yel_A, 5yj3_D, 2wbs_A |
| Binding Motifs: | M0492_1.02 yrkTKTAAwr |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.