Transcription Factor
| Accessions: | T141100_1.02 (CISBP 1.02) |
| Names: | fgenesh1_pg.scaffold_252000020, T141100_1.02; |
| Organisms: | Physcomitrella patens |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:SBP |
| Length: | 892 |
| Pfam Domains: | 433-509 SBP domain |
| Sequence: (in bold interface residues) | 1 MEVLSMEEVSREGKLRKCSAGRSQFVISRLAPFEDDVGELRDSGPLSVLESSGRLNLVVS 60 61 IVRIAAGVHNSSPNCSPSLRTSPTIPPEFRTADCLSRDFTRFLNGCTSLDLRKNMNRQVG 120 121 NEVIKFGAPALRSCAYTVETISTSHVRSLRVGHPLDSSGTKAASASSVAWKRQKAWTWRV 180 181 LSPLSLKLVNQLSLAFKKAPVFYSPSAVYEMNSSTHTNEQQGDLSWSTENWDNPGAVSTF 240 241 DQASRPYNSANRQEWEWDPMILAQHPGSGGSADDGSHDGDCLKNHISGGTMSSFRTTYNM 300 301 NMLSAGLPSNFTQNPMGIFSSAGIRHYGSLDGPGQLSTSNIHSALGPSGIPGLAATSGSS 360 361 LDNDIRSYDQRRREFIAAGMHNHHVKREEVNDGHARIGLNLGVRTYFSTEDTTTNRLVKR 420 421 HRAGSPGPHIPLCQAEGCKSDLSTAKQYHRRHKVCELHSKAPNVVAGGQTQRFCQQCSRF 480 481 HSLGEFDDGKRSCRKRLADHNRRRRKPQPYASAPGGTSAECIGIKNGEDNLSGSNHANDS 540 541 KSLIIPLKSRSSPSSVSLEDSDEKPGSAGNNLHLRSSSQGYGRAPCDDQHSSHSEMQMTS 600 601 QAMTGSDSLLSAMSSVPLMLQNAKRQMTMIGGTGNHGHDHSIYQQHLHVQTGSSTGKTGP 660 661 NLSLSSLGGQLGLSHQGGGRSQTIPGQIYNGLESPVSWLRPLNPRSDLTHVVGRQSAMNL 720 721 QHLMSNDSKSGITSASANSSNTQEHDVQAFSPSSQNLIPRDIASPEWMLGSMAGQAPRTG 780 781 SNPYGTSALNNLSGNGQLESGHQIMSLIDQPNQGCGHPGNGGCNQTVQGSHTPMEFMQQH 840 841 NTVTEADSGGDNTSRGGGSTVDSPDMKYPELQALRPYASGPSSIFNSRHTLL |
| Interface Residues: | 532, 709 |
| 3D-footprint Homologues: | 7vru_B, 4efj_A |
| Binding Motifs: | M1571_1.02 svgkaCrrb |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.