Transcription Factor

						

			
Accessions: T007666_1.02 (CISBP 1.02)

			
Names: Arid5a, T007666_1.02;
Organisms: Rattus norvegicus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:ARID/BRIGHT
Length: 615
Pfam Domains:    73-162 ARID/BRIGHT DNA binding domain
Sequence: 
(in bold interface residues)		   1 GRPDLCVVNSFIKLQKLKLHMAADHQTAPSAKGKAEQSEEGDLQEPPVSPKPQDEQSKSQ   60
  61 SPIQLEDSPKAGGEQEEEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLG  120
 121 AYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPPTKPR  180
 181 KQYKMAKELRGDDGATEKLKKAKDSEERQADQTTSEKTKSDAPGQTQLPRQGSSRDSTEQ  240
 241 LGPVSGSSPPFLGANSCPEAYKRLLASFYCKGAHGIMSPLAKKKLLAQVSKAEALQCQEE  300
 301 GCRHGARSPNKDLQESSQNPRGLAENSEHQLTPPEGLRAPGGSTGVEAQVGPCPTAPTFL  360
 361 GRFHAYPTEVLKPVSQHPRDFFSSLKDRVLLGPPGKEEGLTAKESQLVWGGDANRPSAFH  420
 421 KGSTRKRSFYPKPKACWVSPMAKVPAESPGAPLPHPRSPGLSKKRGLEEEGYTHGGKKLK  480
 481 AVSPFLKEVDARESEGKPAAPGLAVSCLLGPALGPTPPESYRGTMLRCPLNFTSSADPLK  540
 541 GQASLPFSPLVIPTFPAHLLATTGPSPMATSLMHFPPTPYDTVLRNRLGPASSAWHVPPV  600
 601 TTYAAPHFFHLNTKL
Interface Residues: 132, 145, 146, 149, 150
3D-footprint Homologues: 2oeh_A, 1kqq_A
Binding Motifs: M0110_1.02 bysrwATtry
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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