Transcription Factor
| Accessions: | 5zjs_B (3D-footprint 20231221), 5zjt_B (3D-footprint 20231221) |
| Names: | Dpbx, EXD_DROME, Homeobox protein extradenticle |
| Organisms: | Drosophila melanogaster |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Uniprot: | P40427 |
| Length: | 72 |
| Pfam Domains: | 1-60 Homeobox domain 19-57 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKK 60 61 NIGKAQEEANLY |
| Interface Residues: | 1, 2, 3, 4, 45, 46, 48, 49, 52, 53, 56, 57, 60 |
| 3D-footprint Homologues: | 3d1n_M, 5zfz_A, 6fqp_B, 1puf_A, 1fjl_B, 3cmy_A, 6a8r_A, 1zq3_P, 1jgg_B, 2lkx_A, 2ld5_A, 1b72_A, 3l1p_A, 4j19_B, 5zjt_E, 1au7_A, 1puf_B, 5jlw_D, 7q3o_C, 1le8_A, 1ig7_A, 4xrm_B, 2hdd_A, 1le8_B, 6m3d_C, 4cyc_A, 2r5y_A, 6es3_K, 4xrs_G, 1mnm_C, 7psx_B, 1du0_A, 3a01_E, 2d5v_B, 1k61_B, 5flv_I, 3lnq_A, 4qtr_D, 2h1k_B, 6fqq_E, 5hod_A, 3rkq_B, 8g87_X, 2hos_A |
| Binding Motifs: | 5zjs_AB ATGAtTaA 5zjs_B atGA 5zjt_AB TTATTTATCAT |
| Binding Sites: | 5zjs_C 5zjs_D 5zjt_C 5zjt_D |
| Publications: | Zeiske T, Baburajendran N, Kaczynska A, Brasch J, Palmer AG 3rd, Shapiro L, Honig B, Mann RS. Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep 24:2221-2230 (2018). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.