Transcription Factor
| Accessions: | T140839_1.02 (CISBP 1.02), Q8RY95 (JASPAR 2024), T00376 (AthalianaCistrome v4_May2016) |
| Names: | SPL14, T140839_1.02;, Protein FUMONISIN B1-RESISTANT 6, SPL1-related protein 2, SPL14_ARATH, Squamosa promoter-binding-like protein 14, AT1G20980, T00376; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:SBP, ecotype:Col-0, experiment type: DAP-seq |
| Length: | 1036 |
| Pfam Domains: | 119-196 SBP domain |
| Sequence: (in bold interface residues) | 1 MDEVGAQVAAPMFIHQSLGRKRDLYYPMSNRLVQSQPQRRDEWNSKMWDWDSRRFEAKPV 60 61 DVEVQEFDLTLRNRSGEERGLDLNLGSGLTAVEETTTTTQNVRPNKKVRSGSPGGNYPMC 120 121 QVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSC 180 181 RRRLAGHNRRRRKTTQPEEVASGVVVPGNHDTTNNTANANMDLMALLTALACAQGKNAVK 240 241 PPVGSPAVPDREQLLQILNKINALPLPMDLVSKLNNIGSLARKNMDHPTVNPQNDMNGAS 300 301 PSTMDLLAVLSTTLGSSSPDALAILSQGGFGNKDSEKTKLSSYENGVTTNLEKRTFGFSS 360 361 VGGERSSSSNQSPSQDSDSRGQDTRSSLSLQLFTSSPEDESRPTVASSRKYYSSASSNPV 420 421 EDRSPSSSPVMQELFPLQASPETMRSKNHKNSSPRTGCLPLELFGASNRGAADPNFKGFG 480 481 QQSGYASSGSDYSPPSLNSDAQDRTGKIVFKLLDKDPSQLPGTLRSEIYNWLSNIPSEME 540 541 SYIRPGCVVLSVYVAMSPAAWEQLEQKLLQRLGVLLQNSPSDFWRNARFIVNTGRQLASH 600 601 KNGKVRCSKSWRTWNSPELISVSPVAVVAGEETSLVVRGRSLTNDGISIRCTHMGSYMAM 660 661 EVTRAVCRQTIFDELNVNSFKVQNVHPGFLGRCFIEVENGFRGDSFPLIIANASICKELN 720 721 RLGEEFHPKSQDMTEEQAQSSNRGPTSREEVLCFLNELGWLFQKNQTSELREQSDFSLAR 780 781 FKFLLVCSVERDYCALIRTLLDMLVERNLVNDELNREALDMLAEIQLLNRAVKRKSTKMV 840 841 ELLIHYLVNPLTLSSSRKFVFLPNITGPGGITPLHLAACTSGSDDMIDLLTNDPQEIGLS 900 901 SWNTLRDATGQTPYSYAAIRNNHNYNSLVARKLADKRNKQVSLNIEHEVVDQTGLSKRLS 960 961 LEMNKSSSSCASCATVALKYQRRVSGSQRLFPTPIIHSMLAVATVCVCVCVFMHAF PIV 1020 1021 RQGSHFSWGGLDYGSI |
| Interface Residues: | 853 |
| 3D-footprint Homologues: | 5nw5_B |
| Binding Motifs: | MA0586.1 yybygtCCGTACrrkrksr M1561_1.02 gkdgTACgg M0738 / MA0586.2 tCCGTACaaww MA0586.3 tCCGTAC |
| Binding Sites: | MA0586.2.1 MA0586.2.10 MA0586.2.11 MA0586.2.12 MA0586.2.13 MA0586.2.14 MA0586.2.15 MA0586.2.16 MA0586.2.17 MA0586.2.18 MA0586.2.19 MA0586.2.2 MA0586.2.20 MA0586.2.3 MA0586.2.4 MA0586.2.5 MA0586.2.6 MA0586.2.7 MA0586.2.8 MA0586.2.9 MA0586.3.1 MA0586.3.10 MA0586.3.11 MA0586.3.12 MA0586.3.13 MA0586.3.14 MA0586.3.15 MA0586.3.16 MA0586.3.17 MA0586.3.18 MA0586.3.19 MA0586.3.2 MA0586.3.20 MA0586.3.3 MA0586.3.4 MA0586.3.5 MA0586.3.6 MA0586.3.7 MA0586.3.8 MA0586.3.9 |
| Publications: | Liang X., Nazarenus T. J., Stone J. M. Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance.. Biochemistry 47:3645-3653 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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