Transcription Factor
| Accessions: | 1qne_B (3D-footprint 20231221), 1vto_B (3D-footprint 20231221) |
| Names: | AtTBP1, TATA sequence-binding protein 1, TATA-binding factor 1, TATA-box factor 1, TATA-box-binding protein 1, TBP-1, TBP1_ARATH, Transcription initiation factor TFIID TBP-1 subunit, TRANSCRIPTION INITIATION FACTOR TFIID-1, TATA BINDING PROTEIN |
| Organisms: | Arabidopsis thaliana |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Uniprot: | P28147 |
| Length: | 188 |
| Pfam Domains: | 13-95 Transcription factor TFIID (or TATA-binding protein, TBP) 100-186 Transcription factor TFIID (or TATA-binding protein, TBP) |
| Sequence: (in bold interface residues) | 1 PVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTT 60 61 ALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRL 120 121 EGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYP 180 181 VLSEFRKI |
| Interface Residues: | 17, 19, 47, 48, 62, 64, 70, 72, 106, 107, 109, 138, 139, 153, 155, 161, 163 |
| 3D-footprint Homologues: | 1ytb_A, 5oqj_O, 1ais_A, 4wzs_D, 6cnb_R, 1cdw_A, 5iy6_P, 7z7n_D, 1qna_B, 5n9g_G |
| Binding Motifs: | 1qne_B cTtTTATA 1vto_B TATAAaAg |
| Binding Sites: | 1qne_E / 1vto_E 1qne_F / 1vto_F |
| Publications: | Patikoglou G.A, Kim J.L, Sun L, Yang S.H, Kodadek T, Burley S.K. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes & development 13:3217-30 (1999). [Pubmed] Kim J.L, Burley S.K. 1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG. Nature structural biology 1:638-53 (1994). [Pubmed] |
| Related annotations: | PaperBLAST |
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