Transcription Factor
| Accessions: | T007881_1.02 (CISBP 1.02) |
| Names: | NCU01238, T007881_1.02; |
| Organisms: | Neurospora crassa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:ARID/BRIGHT |
| Length: | 1736 |
| Pfam Domains: | 100-131 jmjN domain 162-251 ARID/BRIGHT DNA binding domain 454-500 PHD-finger 627-743 JmjC domain, hydroxylase 862-920 C5HC2 zinc finger 933-1284 PLU-1-like protein 1337-1382 PHD-finger |
| Sequence: (in bold interface residues) | 1 MVSTPSGGGSVAVAAAGTSSNNASARASPTVTSHSSNGKSKTAPVNSNGYHPPKSQIPLS 60 61 FMKSEPLDLNSVERRGQPTACKEPSKKKNRPHGLEEAPSYCPTEEEWKEPFEYIRKITPE 120 121 ASKFGICKIIPPESWNPDFAIDTERFHFRTRKQELNSIEGSSRANINYIDALQKFHRQHG 180 181 NNLTRLPYVDKKPLDLFRLKKAVEARGGFDKVCKLKKWAEIGRDLGYSGKIMSSLSTSLK 240 241 NSYQKWLCPYEDYLRVAKPGVHQQLELEYGGPLTPSPAPSPMKRSNAQTPSDLRGESPSR 300 301 HPTEAAVNGHAKDSDRDVTMTDAPSVPAPPVKSGFTAINTGGFTAINSGFTSINRPLAPA 360 361 SEAITPLSSAKNTPEVRPSAAGSSSLKRQLSFDSTSDSAKKESSVDKDDGEAGSRRSKRL 420 421 KKDSVPTVAGSHMSLFRPSAPRIPREDSSSGENCEQCGKGSEEGSCMLVCESCDNHYHGS 480 481 CLDPPLKTKPENEWNCPRCLVGDGQFGFEEGGLYSLKQFQEKAADFKQGYFENKMPFDAV 540 541 LNCHRPVTEDDVEREFWRLVADLEETVEVEYGADIHCTTHGSGFPTVEKNPNNPYSTDPW 600 601 NLNLLPLHPESLFRYIKTDISGMTVPWVYVGMIFSTFCWHNEDHYAYSANYQHFGATKTW 660 661 YGIPGEDAEKFEAAMREAVPELFETQPDLLFQLVTLLTPEQLKKAGVRVYALDQRAGQFV 720 721 ITFPKAYHAGFNHGFNFNEAVNFAPSDWEPFGHAGVERLQTFRRQPCFSHDELLWAAADG 780 781 ITGTGLTIQTAKWLAPALDRIHQREMVQRREFIGKHDFIATHLDAKHPSPHHLCVFNGET 840 841 NEKCPIQFAINDVDVPEDEYACFYCKAYTYLSRFVCLKTGMVLCLLHAGSHKCCDAQESD 900 901 RFLGKEHALYYRKSDEVMASTLKRVTDKASVPETWEEKYQRLLDDEAKPSLKALRNLLSE 960 961 GEKIPYELPSLSTLKLFVDRCNHWVEEATNYTIRKQQNRRKSEKAWPVGVRKSVGNAEHD 1020 1021 QKEREMRNVANIHRLLDEAEMIGFDCPEIQQLRERAEAIKAFQETAKKVLDLPRDLQPIG 1080 1081 SIEELLEEGQNFNVDIPEVEKLYSALERLRWDEKARESRSKFMTLDEAQELVDEGKRLGI 1140 1141 QIYEDNIKYLEEKLEKGREWEKKARELINADVVNYSQLDSLSVQAQHANLPISKGTLDMV 1200 1201 DAILYKQREAQRQIIDLNKRSADPDYTQRPKYNEVAEVMRKVEELQAKPPGTLDLEKEQK 1260 1261 RHEDWMRKGKKLFGKSNAPLHILKSHMDYVLDRNKWCFNTVEDTPRSPAEPASREPSVDG 1320 1321 EHDSSDNEDENGSRQVFCICRRVEAGMMIECEQCHEWYHGKCLKIARGKVKEDDKYTCPI 1380 1381 CDWRVKIPRDASRPKLEDLIAWYEEIPNLPFRPEEEGVLKDIIDMAERFRKHISPLCSGF 1440 1441 STAADAENQRFYLRKIEGAEILLAYETNYLRQELHKWNPVAPEPPPILEQSKSTRKPRPT 1500 1501 KLQKLLQQHGVQDPDDLPEDVRGRANSLKRKAQNAEAHAGGLGTGPGMHPFGPSHTYFSR 1560 1561 QSSAQPQTPGLPMTNSSHAHPSRGPDSVSPSNTLNGRTGSLSHHSPLHHSRYFNGDNSTS 1620 1621 GQALSIEDRILRDHHDNDDHADANRAKFRDSIWGSASSATKRSSASALVTENDPMGIGPP 1680 1681 ADEGVADNHMFIDLVHDDDEEDERRGAAASASADLVADHHHHRHEMETDHDHLLEV |
| Interface Residues: | 219, 232, 233, 234, 237, 238 |
| 3D-footprint Homologues: | 2oeh_A, 1kqq_A |
| Binding Motifs: | M0112_1.02 yyygATry |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.