Transcription Factor
| Accessions: | T097616_1.02 (CISBP 1.02) |
| Names: | ENSTNIG00000008122, T097616_1.02; |
| Organisms: | Tetraodon nigroviridis |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 2992 |
| Pfam Domains: | 826-850 Zinc-finger of C2H2 type 1389-1411 C2H2-type zinc finger 1590-1609 C2H2-type zinc finger 1756-1780 Zinc finger, C2H2 type 1756-1778 C2H2-type zinc finger 2281-2321 Homeobox domain 2339-2395 Homeobox domain 2482-2538 Homeobox domain 2552-2574 C2H2-type zinc finger 2796-2852 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MATCDSPLMVPSRQQEHGGRRLDAAAAAEDNSVIAMENSVVNSITANNDQPVIIGEPENG 60 61 VGEPTVSPLRSTVTPTTVSATTDAVTEQSRKESFTTGNKGSVTGTLPGVGGGAAVGSDCS 120 121 APVTCPVAPAKEIPCNECSNSFSSLQNYMEHHCPNGRLPTGGRKEGEDDEGMVGEDSEDD 180 181 GENEIGAADMGEINSEMEMEDDSDVENLCSDIIYQPDGSAFILEDAKEQRGNQGVLSGSL 240 241 QFRGLLSPHTFPSAQVSSSQSGLSPGGERLDQPAAPMSFYPPLINTFHIASSLGSKSLAP 300 301 DHPSFQNTSVGGMAGAGPVLHSFRVYDLRHKNDKDYLTADGAAKNSCVSKDVPNNVDLSK 360 361 FEGCVADGRRKPVLMCFLCKLSFGYSRSFVTHAVHDHRMTLTEAEQKLLSNKHVSAIIQG 420 421 IGKDKEPLISFLEPKKPLNSGLSHFPTSANFLGPDTGLRGLWNAFHSSGENAESLQAGFA 480 481 FLKGSASSSSSDQNPRTQTMPKAETNPNLGGGAGAHRTPSGSSAATGGTLEGRNSDSDCK 540 541 GLIRDICTLQSNGPDLSQYPPIKHEPGSVGGESPDQDEDTYSNGGGVEMEADEEEDQAMT 600 601 MAITGQRADSTGSKDFPLLNQSISPLSNSVLKFNSDSKSPASTSSSSLPVCEKLEMDKSR 660 661 LSTALASARERESSNDSTSEALVGQDGSSPSSNPIDMIMVRREDESPGPLHQHTGNSSTP 720 721 GTPGTPGTPGPGEGSPGSGVECPKCDTVLGSSRSLGGHMTMMHSRNSCKTLKCPKCNWHY 780 781 KYQQTLDAHMKEKHPESGGSCVYCRTGQPHPRLARGESYTCGYKPFRCEVCNYSTTTKGN 840 841 LSIHMQSDKHLNNVQTLQNGGSEAQFNHNHANSVPSASLGGSCGAPSPSKPKQKPTWRCE 900 901 VCDYETNVARNLRIHMTSEKHMHNMMLLQQNMKQIQHNLHLGLAPAEAELYQYYLAQNMG 960 961 LAGVKLENLAGNSGPEAQMMMNPFQLDPATAAALGSGLMNSDLSAELRLAGGQMMADDLS 1020 1021 LVSSGGMGSMSSTDPSLTSLSPPINDPSLRVYQCAVCNCYSTDSLEALNAHVNTERSLPE 1080 1081 EEWRCVVGDVYQCKLCTYNTQLKANFQLHCKTDKHMQKHQLVAHIKEGGKANQWRLKCVA 1140 1141 IGNPVHLKCNACDYYSNSVDKLRLHATNQRHEASIRLYKKGMFADTSHQKHLQKQDGAYG 1200 1201 PDSCVYYCTLCDYSTKARLNLVQHARSARHQQNEGLRKLQLHQQGLGGDEDGLSLRELFQ 1260 1261 VKESPSSQGLRVVRGANARAHSSVDAGVEAAQVYIFLYSSSLFIVCAVPGEDAAEDRPRP 1320 1321 PRSSSRPGHNAADRDVTDRPERMNAISKEVIGPNAMGKHPLLSDPRIESPPKRPKSTEGK 1380 1381 TSANEQVQQCPYCNYSSKDANRMQLHVMSQHSMQPVIRCPLCQDVLSNKIHLQLHLTHLH 1440 1441 SVAPDCVEKLILTVSDCVCVYKNSSLDSSVLPNDGSGKPQVLGDIAKDERTSQDKNYLDQ 1500 1501 QAEEFKHLKEASEASGWKKAGGLGRESKSPDALQDHLSELQRLQQQQQQLSVSDRHVYKY 1560 1561 RCNHCSLAFKTMQKLQIHSQYHAIRAATMCSLCQRSFRTFLALRKHLENGHPELSEAEVQ 1620 1621 QLIGNLPLNGDITESEVRALEEAQAFEHDLDKDDEMDQEEKPSPTGSDSSSLLDEMGAEP 1680 1681 KRTLPFRKGPNFTMEKFLDPSRPYKCTVCKESFTQKNILLVHYNSVSHLHKLKKVLQEAS 1740 1741 SPVPQETSNSIDNKPFKCNICNVAYSQSSTLEIHMRSVLHQTKARTAKTETSSSSTGSSG 1800 1801 SGGPVPAKSPAPSTQGNSNSDAARSGTPSANKENTVEPKESNSSTNTKPTTATDHVSAQT 1860 1861 SSHVSAQSSAQLQMQLQHELQQQGAFFQPQFLNPAFFPHFPITPEALLQFQQPQFLFPFY 1920 1921 IPGAEFNLSPELALHSAAAFGMPGLSGSFLEDLKQQMQQQHQLQQAQAQQQAHQQQASQT 1980 1981 ASQIQQQKSQQAQNQKAKADCNAMSAEMSRDADDHLERQESRSKMENAGDLSDGGKDKDN 2040 2041 KKSKFPEPLIPPPRIVSGARGNAAKALLENFGFELVIQYNENRQKNQKKNKDGVEQADVS 2100 2101 TDKLECGMCGKLFSNMLILKSHQEHVHSLLFPHGELEKFAQQYREAYDKLYPINPASPEA 2160 2161 PAPVTNTQPPSTSLTKSQTPVPSPAPVSHQNPHQNSHQASPSQPAPQTPTAPSAPPQVQL 2220 2221 PVPLDLPLFPPLMMQSVQHPGLPPQLALQLPTMDALSTDLTQLCQQQLGLDPNFLRQSQF 2280 2281 KRPRTRITDDQLKILRANFDINNSPSEEQIQEMSEKSGLPQKISTYEYHRGDGSNMNKRS 2340 2341 SRTRFTDYQLRILQDFFDTNAYPKDDEIEQLSTVLSLPTRVIVVWFQNARQKARKSYENQ 2400 2401 ADSKDNEKKELTNERYIRTSNMQYQCKNQLLSGGLSQIPSQSGSGLASATGSGAMKRKLD 2460 2461 DKDDNTHDKDGGNSGEEQHRDKRLRTTITPEQLEILYDKYLLDSNPTRKMLDHIAREVGL 2520 2521 KKRVVQVWFQNTRARERKGQFRAIGPSQSHKKCPFCRALFKAKSALDSHIRSRHWHEAKQ 2580 2581 AGFSLPPSPMMSQDHDRGESPNKYFFDYPQLPTKTEPNEYELPASSSTPVKPSEAQVKNF 2640 2641 LSPSSLKAENCDETEGPNINSAETSSYDLSKIDFDETSSINTAISDATTGDEGNNNEVEN 2700 2701 FTANGEKLSDSKSCLASNSDSGNERFQFSMVSPALSVSGKDYDSYFNLRDDEMDESNDRS 2760 2761 ESSSLADPSSPSPFGSGNPFSKSGKGSNSGDRPGQKRFRTQMSNLQLKVLKACFSDYRTP 2820 2821 TMQECEILGNEIGLPKRVVQVWFQNARAKEKKFKINIGKPFMISQGSPDGPRPECTLCGV 2880 2881 KYTARMSVRDHIFSKQHITKVQETMGNQVDREKDYLAPTTVRQLMAQQELDRLKKSSDGL 2940 2941 GLPGQQQQTTVDSNALHGLSLPSGYPGLSGLPPVLLPGVNGPSSLPVFPPNT |
| Interface Residues: | 751, 753, 754, 757, 761, 782, 784, 785, 788, 806, 808, 809, 810, 811, 812, 813, 815, 816, 837, 838, 839, 840, 841, 843, 1399, 1401, 1402, 1405, 1428, 1430, 1431, 1434, 1570, 1571, 1573, 1574, 1577, 1599, 1600, 1601, 1602, 1604, 1605, 1609, 1620, 1643, 1644, 1647, 1667, 1669, 1670, 1673, 1686, 1688, 1691, 1692, 1694, 1714, 1715, 1716, 1717, 1718, 1721, 1737, 1738, 1739, 1741, 1742, 1744, 1745, 1748, 1766, 1767, 1768, 1769, 1770, 1772, 1773, 2284, 2339, 2340, 2341, 2342, 2380, 2381, 2383, 2384, 2387, 2388, 2391, 2392, 2395, 2482, 2485, 2523, 2526, 2527, 2530, 2531, 2533, 2534, 2535, 2538, 2796, 2797, 2798, 2799, 2840, 2841, 2844, 2845, 2848, 2849, 2852 |
| 3D-footprint Homologues: | 8ssq_A, 5kkq_D, 8ssu_A, 5yel_A, 5k5l_F, 6e94_A, 7y3l_A, 2wbs_A, 5k5i_A, 8gn3_A, 3uk3_C, 8cuc_F, 7ysf_A, 2lt7_A, 7y3m_I, 5yj3_D, 5v3j_F, 7w1m_H, 2kmk_A, 6u9q_A, 1g2f_F, 6ml4_A, 7n5w_A, 8h9h_G, 1f2i_J, 4x9j_A, 7txc_E, 1llm_D, 2d5v_B, 1fjl_B, 3d1n_M, 1puf_A, 6fqp_B, 8pmf_A, 1ig7_A, 1nk2_P, 1zq3_P, 6m3d_C, 2lkx_A, 2ld5_A, 7psx_B, 8eml_B, 3rkq_B, 5jlw_D, 2r5y_A, 8osb_E, 4xrs_G, 5zjt_E, 4cyc_A, 5flv_I, 1puf_B, 6fqq_E, 3cmy_A, 8ejp_B, 6a8r_A, 5hod_A, 8ik5_C, 1b72_A, 6wig_A, 6ryd_F, 1le8_A, 1e3o_C, 8g87_X, 5zfz_A, 1jgg_B, 3lnq_A, 7q3o_C, 6es3_K, 2hos_A, 9b8u_A, 2hdd_A, 1au7_A, 2xsd_C, 7xrc_C, 8bx1_A, 1o4x_A, 1du0_A, 4qtr_D |
| Binding Motifs: | M1080_1.02 vyTAATTrs |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.