Transcription Factor
| Accessions: | Q8VWK4 (JASPAR 2024) |
| Names: | AtTRB1, MYB transcription factor, Telomere repeat-binding factor 1, TRB1_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 300 |
| Pfam Domains: | 5-55 Myb-like DNA-binding domain 123-178 linker histone H1 and H5 family |
| Sequence: (in bold interface residues) | 1 MGAPKQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMA 60 61 NGWGSREKSRLAVKRTFSLPKQEENSLALTNSLQSDEENVDATSGLQVSSNPPPRRPNVR 120 121 LDSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLKYLTSCGKLVKVKRK 180 181 YRIPNSTPLSSHRRKGLGVFGGKQRTSSLPSPKTDIDEVNFQTRSQIDTEIARMKSMNVH 240 241 EAAAVAAQAVAEAEAAMAEAEEAAKEAEAAEAEAEAAQAFAEEASKTLKGRNICKMMIRA 300 |
| Interface Residues: | 5, 46, 47, 50, 51, 54, 55, 56, 104, 162 |
| 3D-footprint Homologues: | 7c4r_A, 3osg_A, 1vfc_A, 1w0t_A, 2qhb_A, 5eyb_B, 7m08_A, 7c0j_A |
| Binding Motifs: | MA2032.1 aaAACCCTArw MA2032.2 aAACCCTAr |
| Binding Sites: | MA2032.1.1 / MA2032.1.17 / MA2032.1.19 MA2032.1.10 MA2032.1.11 MA2032.1.12 MA2032.1.13 / MA2032.1.5 MA2032.1.14 MA2032.1.15 MA2032.1.16 / MA2032.1.6 MA2032.1.18 MA2032.1.2 MA2032.1.20 MA2032.1.3 MA2032.1.4 MA2032.1.7 MA2032.1.8 MA2032.1.9 MA2032.2.1 / MA2032.2.11 / MA2032.2.13 / MA2032.2.16 / MA2032.2.17 / MA2032.2.19 / MA2032.2.20 / MA2032.2.5 / MA2032.2.6 / MA2032.2.8 MA2032.2.10 MA2032.2.12 MA2032.2.14 MA2032.2.15 / MA2032.2.3 / MA2032.2.4 / MA2032.2.7 MA2032.2.18 MA2032.2.2 MA2032.2.9 |
| Publications: | Schrumpfová PP, Vychodilová I, Hapala J, Schořová Š, Dvořáček V, Fajkus J. Telomere binding protein TRB1 is associated with promoters of translation machinery genes in vivo. Plant Mol Biol : (2016). [Pubmed] |
| Related annotations: | PaperBLAST |
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