Transcription Factor

						

			
Accessions: T098507_1.02 (CISBP 1.02)

			
Names: Gsc, T098507_1.02;
Organisms: Drosophila melanogaster
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Homeodomain
Length: 485
Pfam Domains:   353-409 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MSAKRESRYFFKILSSLWTPGGGGGGTTTTTPSTTPDIPPSKAKFKITVVSTPSPSPPPT   60
  61 PPPAGSMLAQMVETNSPPAGYTLKRSPSDLGEQQQPPRQISRSPGNTAAYHLTTAMLLNS  120
 121 QQCGYLGQRLQSVLQQQHAQHQQSQSQTPSSDDGSQSGVTILEEERRGGAAAASLFTIDS  180
 181 ILGSRQQGGGTAPSQGSHISSNGNQNGLTSNGISLGLKRSGAESPASPNSNSSSSAAASP  240
 241 IRPQRVPAMLQHPGLHLGHLAAAAASGFAASPSDFLVAYPNFYPNYMHAAAVAHVAAAQM  300
 301 QAHVSGAAAGLSGHGHHPHHPHGHPHHPHLGAHHHGQHHLSHLGHGPPPKRKRRHRTIFT  360
 361 EEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKREEQERLRK  420
 421 LQEEQCGSTTNGTTNSSSGTTSSTGNGSLTVKCPGSDHYSAQLVHIKSDPNGYSDADESS  480
 481 DLEVA
Interface Residues: 352, 353, 354, 355, 356, 394, 395, 397, 398, 401, 402, 404, 405, 406, 409
3D-footprint Homologues: 4j19_B, 1puf_B, 8ejp_B, 6a8r_A, 1fjl_B, 3cmy_A, 8pmf_A, 1ig7_A, 5zfz_A, 1puf_A, 3d1n_M, 3lnq_A, 1nk2_P, 1zq3_P, 2lkx_A, 6m3d_C, 1jgg_B, 2ld5_A, 7q3o_C, 6es3_K, 5zjt_E, 8ik5_C, 7psx_B, 5hod_A, 1au7_A, 3a01_E, 8osb_E, 5jlw_D, 3rkq_B, 8eml_B, 1b72_A, 4xrs_G, 2hdd_A, 4cyc_A, 2r5y_A, 5flv_I, 2hos_A, 9b8u_A, 2xsd_C, 1e3o_C, 7xrc_C, 4qtr_D, 1o4x_A, 8g87_X, 1du0_A, 8bx1_A
Binding Motifs: M1096_1.02 yTAATCcs
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.