Transcription Factor

						

			
Accessions: T071455_1.02 (CISBP 1.02)

			
Names: BGIBMGA004818, T071455_1.02;
Organisms: Bombyx mori
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:CENPB
Length: 499
Pfam Domains:      6-57 CENP-B N-terminal DNA-binding domain
    17-50 Helix-turn-helix domain
Sequence: 
(in bold interface residues)		   1 MATKGKRPMRALTPGDKIEAIQRVNDGESKASVARDIGVPESTLRGWCKNEDKLRYMTSR   60
  61 LSSPDTDKSNDGEPLEKRARTVSPAAPSPPAPSGLDLTAASIPTSTATQLPPAPADAPVE  120
 121 LTTKRSEPSPIPHVPRERRPDPGASVSMSAISPLSGLGHIPGLSHSHLGLSFNEIATNLT  180
 181 LLAQLNPGLSALSAQPSSLLRSVRSPKPAHNGGLNLSDTKHRKSHHSDPYRHSGSKSSHH  240
 241 HGSLPSAATQPVDDTLWYWLKTQQAMLDLTAQTTAAHPLQLSKSSESSMPSKPVAPAAPV  300
 301 NPHLDYNRNSWLWQYYKQFGGAMPLPEDKHKPASQVPKEKTAENILYSQLTKGKPEKGTA  360
 361 ISPDRPQLREEDTRDTPNEGIRVATPVASPEIGSENKEPMTERSLDAPRNQTKARTVLDS  420
 421 LLFNNSGATTNKDSAAENQPNEEWETGAAEALEHGDKFLSWLESSGDPSVTRMHVHQLRA  480
 481 LLHNLRARRAPSAEHARRK
Interface Residues: 31, 41, 42, 45, 46, 49, 50, 53, 67, 70, 220, 221, 231, 302, 303
3D-footprint Homologues: 4z5h_A, 5zfz_A, 6a8r_A, 1f5e_P, 7p0w_A
Binding Motifs: M0580_1.02 yycgCGrhyt
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.